This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3dzc
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 3dzc is ON HOLD Authors: Minasov, G., Shuvalova, L., Dubrovska, I., Winsor, J., Papazisi, L., Kwon, K., Hasseman, J., Peterson, S.N., Anderson, W.F....) |
|||
| (9 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | '''Unreleased structure''' | ||
| - | + | ==2.35 Angstrom resolution structure of WecB (VC0917), a UDP-N-acetylglucosamine 2-epimerase from Vibrio cholerae.== | |
| - | + | <StructureSection load='3dzc' size='340' side='right'caption='[[3dzc]], [[Resolution|resolution]] 2.35Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3dzc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DZC FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.35Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr> | |
| - | '' | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dzc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dzc OCA], [https://pdbe.org/3dzc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dzc RCSB], [https://www.ebi.ac.uk/pdbsum/3dzc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dzc ProSAT], [https://www.topsan.org/Proteins/CSGID/3dzc TOPSAN]</span></td></tr> |
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q9KTI5_VIBCH Q9KTI5_VIBCH] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dz/3dzc_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dzc ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Vibrio cholerae]] | ||
| + | [[Category: Anderson WF]] | ||
| + | [[Category: Dubrovska I]] | ||
| + | [[Category: Hasseman J]] | ||
| + | [[Category: Kwon K]] | ||
| + | [[Category: Minasov G]] | ||
| + | [[Category: Papazisi L]] | ||
| + | [[Category: Peterson SN]] | ||
| + | [[Category: Shuvalova L]] | ||
| + | [[Category: Winsor J]] | ||
Current revision
2.35 Angstrom resolution structure of WecB (VC0917), a UDP-N-acetylglucosamine 2-epimerase from Vibrio cholerae.
| |||||||||||
Categories: Large Structures | Vibrio cholerae | Anderson WF | Dubrovska I | Hasseman J | Kwon K | Minasov G | Papazisi L | Peterson SN | Shuvalova L | Winsor J
