1qwo

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(New page: 200px<br /><applet load="1qwo" size="450" color="white" frame="true" align="right" spinBox="true" caption="1qwo, resolution 1.50&Aring;" /> '''Crystal structure of...)
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[[Image:1qwo.gif|left|200px]]<br /><applet load="1qwo" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1qwo, resolution 1.50&Aring;" />
 
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'''Crystal structure of a phosphorylated phytase from Aspergillus fumigatus, revealing the structural basis for its heat resilience and catalytic pathway'''<br />
 
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==Overview==
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==Crystal structure of a phosphorylated phytase from Aspergillus fumigatus, revealing the structural basis for its heat resilience and catalytic pathway==
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In order to understand the structural basis for the high thermostability, of phytase from Aspergillus fumigatus, its crystal structure was, determined at 1.5 A resolution. The overall fold resembles the structure, of other phytase enzymes. Aspergillus niger phytase shares 66% sequence, identity, however, it is much less heat-resistant. A superimposition of, these two structures reveals some significant differences. In particular, substitutions with polar residues appear to remove repulsive ion pair, interactions and instead form hydrogen bond interactions, which stabilize, the enzyme; the formation of a C-terminal helical capping, induced by, arginine residue substitutions also appears to be critical for the, enzyme's ability to refold to its active form after denaturation at high, temperature. The heat-resilient property of A.fumigatus phytase could be, due to the improved stability of regions that are critical for the, refolding of the protein; and a heat-resistant A.niger phytase may be, achieved by mutating certain critical residues with the equivalent, residues in A.fumigatus phytase. Six predicted N-glycosylation sites were, observed to be glycosylated from the experimental electron density., Furthermore, the enzyme's catalytic residue His59 was found to be partly, phosphorylated and thus showed a reaction intermediate, providing, structural insight, which may help understand the catalytic mechanism of, the acid phosphatase family. The trap of this catalytic intermediate, confirms the two-step catalytic mechanism of the acid histidine, phosphatase family.
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<StructureSection load='1qwo' size='340' side='right'caption='[[1qwo]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1qwo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_fumigatus Aspergillus fumigatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QWO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QWO FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NEP:N1-PHOSPHONOHISTIDINE'>NEP</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qwo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qwo OCA], [https://pdbe.org/1qwo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qwo RCSB], [https://www.ebi.ac.uk/pdbsum/1qwo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qwo ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PHYA_ASPFU PHYA_ASPFU] Catalyzes the hydrolysis of inorganic orthophosphate from phytate.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qw/1qwo_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qwo ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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In order to understand the structural basis for the high thermostability of phytase from Aspergillus fumigatus, its crystal structure was determined at 1.5 A resolution. The overall fold resembles the structure of other phytase enzymes. Aspergillus niger phytase shares 66% sequence identity, however, it is much less heat-resistant. A superimposition of these two structures reveals some significant differences. In particular, substitutions with polar residues appear to remove repulsive ion pair interactions and instead form hydrogen bond interactions, which stabilize the enzyme; the formation of a C-terminal helical capping, induced by arginine residue substitutions also appears to be critical for the enzyme's ability to refold to its active form after denaturation at high temperature. The heat-resilient property of A.fumigatus phytase could be due to the improved stability of regions that are critical for the refolding of the protein; and a heat-resistant A.niger phytase may be achieved by mutating certain critical residues with the equivalent residues in A.fumigatus phytase. Six predicted N-glycosylation sites were observed to be glycosylated from the experimental electron density. Furthermore, the enzyme's catalytic residue His59 was found to be partly phosphorylated and thus showed a reaction intermediate, providing structural insight, which may help understand the catalytic mechanism of the acid phosphatase family. The trap of this catalytic intermediate confirms the two-step catalytic mechanism of the acid histidine phosphatase family.
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==About this Structure==
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Crystal structure of a heat-resilient phytase from Aspergillus fumigatus, carrying a phosphorylated histidine.,Xiang T, Liu Q, Deacon AM, Koshy M, Kriksunov IA, Lei XG, Hao Q, Thiel DJ J Mol Biol. 2004 May 28;339(2):437-45. PMID:15136045<ref>PMID:15136045</ref>
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1QWO is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Aspergillus_fumigatus Aspergillus fumigatus] with NAG and PO3 as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/3-phytase 3-phytase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.8 3.1.3.8] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1QWO OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Crystal structure of a heat-resilient phytase from Aspergillus fumigatus, carrying a phosphorylated histidine., Xiang T, Liu Q, Deacon AM, Koshy M, Kriksunov IA, Lei XG, Hao Q, Thiel DJ, J Mol Biol. 2004 May 28;339(2):437-45. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15136045 15136045]
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</div>
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[[Category: 3-phytase]]
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<div class="pdbe-citations 1qwo" style="background-color:#fffaf0;"></div>
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[[Category: Aspergillus fumigatus]]
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[[Category: Single protein]]
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[[Category: Deacon, A.M.]]
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[[Category: Hao, Q.]]
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[[Category: Koshy, M.]]
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[[Category: Kriksunov, I.A.]]
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[[Category: Lei, X.G.]]
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[[Category: Liu, Q.]]
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[[Category: Thiel, D.J.]]
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[[Category: Xiang, T.]]
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[[Category: NAG]]
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[[Category: PO3]]
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[[Category: alpha barrel]]
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[[Category: beta sandwich]]
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[[Category: glycoprotein]]
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[[Category: orthogonal bundle]]
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[[Category: phosphohistidine]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 01:04:18 2007''
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==See Also==
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*[[Phytase 3D structures|Phytase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Aspergillus fumigatus]]
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[[Category: Large Structures]]
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[[Category: Deacon AM]]
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[[Category: Hao Q]]
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[[Category: Koshy M]]
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[[Category: Kriksunov IA]]
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[[Category: Lei XG]]
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[[Category: Liu Q]]
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[[Category: Thiel DJ]]
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[[Category: Xiang T]]

Current revision

Crystal structure of a phosphorylated phytase from Aspergillus fumigatus, revealing the structural basis for its heat resilience and catalytic pathway

PDB ID 1qwo

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