3dpt

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:24, 20 March 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3dpt.jpg|left|200px]]
 
-
<!--
+
==COR domain of Rab family protein (Roco)==
-
The line below this paragraph, containing "STRUCTURE_3dpt", creates the "Structure Box" on the page.
+
<StructureSection load='3dpt' size='340' side='right'caption='[[3dpt]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3dpt]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlorobaculum_tepidum Chlorobaculum tepidum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DPT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DPT FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dpt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dpt OCA], [https://pdbe.org/3dpt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dpt RCSB], [https://www.ebi.ac.uk/pdbsum/3dpt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dpt ProSAT]</span></td></tr>
-
{{STRUCTURE_3dpt| PDB=3dpt | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===COR domain of Rab family protein (Roco)===
+
[https://www.uniprot.org/uniprot/Q8KC98_CHLTE Q8KC98_CHLTE]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
<!--
+
Check<jmol>
-
The line below this paragraph, {{ABSTRACT_PUBMED_18650931}}, adds the Publication Abstract to the page
+
<jmolCheckbox>
-
(as it appears on PubMed at http://www.pubmed.gov), where 18650931 is the PubMed ID number.
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dp/3dpt_consurf.spt"</scriptWhenChecked>
-
-->
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
{{ABSTRACT_PUBMED_18650931}}
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dpt ConSurf].
-
3DPT is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Chlorobaculum_tepidum Chlorobaculum tepidum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DPT OCA].
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
Structure of the Roc-COR domain tandem of C. tepidum, a prokaryotic homologue of the human LRRK2 Parkinson kinase., Gotthardt K, Weyand M, Kortholt A, Van Haastert PJ, Wittinghofer A, EMBO J. 2008 Jul 24. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18650931 18650931]
+
[[Category: Chlorobaculum tepidum]]
[[Category: Chlorobaculum tepidum]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Gotthardt, K.]]
+
[[Category: Gotthardt K]]
-
[[Category: Haastert, P J.M Van.]]
+
[[Category: Kortholt A]]
-
[[Category: Kortholt, A.]]
+
[[Category: Van Haastert PJM]]
-
[[Category: Weyand, M.]]
+
[[Category: Weyand M]]
-
[[Category: Wittinghofer, A.]]
+
[[Category: Wittinghofer A]]
-
[[Category: Alpha-beta-protein]]
+
-
[[Category: Cor]]
+
-
[[Category: Signaling protein]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 13 14:00:06 2008''
+

Current revision

COR domain of Rab family protein (Roco)

PDB ID 3dpt

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools