3d6r

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[[Image:3d6r.jpg|left|200px]]
 
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==Structure of an avian influenza A virus NS1 protein effector domain==
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The line below this paragraph, containing "STRUCTURE_3d6r", creates the "Structure Box" on the page.
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<StructureSection load='3d6r' size='340' side='right'caption='[[3d6r]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3d6r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Influenza_A_virus_(A/duck/Alberta/60/1976(H12N5)) Influenza A virus (A/duck/Alberta/60/1976(H12N5))]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D6R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D6R FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.997&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d6r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d6r OCA], [https://pdbe.org/3d6r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d6r RCSB], [https://www.ebi.ac.uk/pdbsum/3d6r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d6r ProSAT]</span></td></tr>
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{{STRUCTURE_3d6r| PDB=3d6r | SCENE= }}
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</table>
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== Function ==
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===Structure of an avian influenza A virus NS1 protein effector domain===
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[https://www.uniprot.org/uniprot/NS1_I76A2 NS1_I76A2] Inhibits post-transcriptional processing of cellular pre-mRNA, by binding and inhibiting two cellular proteins that are required for the 3'-end processing of cellular pre-mRNAs: the 30 kDa cleavage and polyadenylation specificity factor (CPSF4) and the poly(A)-binding protein 2 (PABPN1). This results in the accumulation of unprocessed 3' end pre-mRNAs which can't be exported from the nucleus. Cellular protein synthesis is thereby shut off very early after virus infection. Viral protein synthesis is not affected by the inhibition of the cellular 3' end processing machinery because the poly(A) tails of viral mRNAs are produced by the viral polymerase through a stuttering mechanism (By similarity). Prevents the establishment of the cellular antiviral state by inhibiting TRIM25-mediated DDX58 ubiquitination, which normally triggers the antiviral transduction signal that leads to the activation of type I IFN genes by transcription factors like IRF3 and IRF7. Prevents human EIF2AK2/PKR activation, either by binding double-strand RNA, or by interacting directly with EIF2AK2/PKR. This function may be important at the very beginning of the infection, when NS1 is mainly present in the cytoplasm. Also binds poly(A) and U6 snRNA. Suppresses the RNA silencing-based antiviral response in Drosophila cells (By similarity).
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Barclay WS]]
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(as it appears on PubMed at http://www.pubmed.gov), where 18585749 is the PubMed ID number.
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[[Category: Hale BG]]
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[[Category: Randall RE]]
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{{ABSTRACT_PUBMED_18585749}}
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[[Category: Russell RJ]]
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==About this Structure==
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3D6R is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Influenza_a_virus Influenza a virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D6R OCA].
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==Reference==
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Structure of an avian influenza A virus NS1 protein effector domain., Hale BG, Barclay WS, Randall RE, Russell RJ, Virology. 2008 Aug 15;378(1):1-5. Epub 2008 Jun 27. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18585749 18585749]
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[[Category: Influenza a virus]]
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[[Category: Single protein]]
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[[Category: Barclay, W S.]]
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[[Category: Hale, B G.]]
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[[Category: Randall, R E.]]
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[[Category: Russell, R J.]]
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[[Category: Alternative splicing]]
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[[Category: Cytoplasm]]
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[[Category: Effector domain]]
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[[Category: Host-virus interaction]]
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[[Category: Influenza]]
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[[Category: Interferon antiviral system evasion]]
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[[Category: Ns1]]
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[[Category: Nucleus]]
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[[Category: Rna-binding]]
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[[Category: Suppressor of rna silencing]]
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[[Category: Viral protein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 13 14:08:21 2008''
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Current revision

Structure of an avian influenza A virus NS1 protein effector domain

PDB ID 3d6r

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