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3dzz

From Proteopedia

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{{Seed}}
 
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[[Image:3dzz.jpg|left|200px]]
 
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==CRYSTAL STRUCTURE OF A PUTATIVE PLP-DEPENDENT AMINOTRANSFERASE (LBUL_1103) FROM LACTOBACILLUS DELBRUECKII SUBSP. AT 1.61 A RESOLUTION==
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The line below this paragraph, containing "STRUCTURE_3dzz", creates the "Structure Box" on the page.
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<StructureSection load='3dzz' size='340' side='right'caption='[[3dzz]], [[Resolution|resolution]] 1.61&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3dzz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_BAA-365 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DZZ FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dzz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dzz OCA], [https://pdbe.org/3dzz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dzz RCSB], [https://www.ebi.ac.uk/pdbsum/3dzz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dzz ProSAT], [https://www.topsan.org/Proteins/JCSG/3dzz TOPSAN]</span></td></tr>
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{{STRUCTURE_3dzz| PDB=3dzz | SCENE= }}
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</table>
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== Evolutionary Conservation ==
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===Crystal structure of putative pyridoxal 5'-phosphate-dependent C-S lyase (YP_813084.1) from LACTOBACILLUS DELBRUECKII BULGARICUS ATCC BAA-365 at 1.61 A resolution===
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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==About this Structure==
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dz/3dzz_consurf.spt"</scriptWhenChecked>
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3DZZ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZZ OCA].
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: Bacteria]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Single protein]]
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</jmolCheckbox>
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[[Category: JCSG, Joint Center for Structural Genomics.]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dzz ConSurf].
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[[Category: Jcsg]]
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<div style="clear:both"></div>
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[[Category: Joint center for structural genomic]]
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__TOC__
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[[Category: Protein structure initiative]]
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</StructureSection>
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[[Category: Psi-2]]
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[[Category: Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365]]
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[[Category: Putative pyridoxal 5'-phosphate-dependent c-s lyase]]
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[[Category: Large Structures]]
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[[Category: Structural genomic]]
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[[Category: Unknown function]]
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[[Category: Yp_813084 1]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 13 14:44:57 2008''
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Current revision

CRYSTAL STRUCTURE OF A PUTATIVE PLP-DEPENDENT AMINOTRANSFERASE (LBUL_1103) FROM LACTOBACILLUS DELBRUECKII SUBSP. AT 1.61 A RESOLUTION

PDB ID 3dzz

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