2vuv

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{{Seed}}
 
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[[Image:2vuv.png|left|200px]]
 
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==Crystal structure of Codakine at 1.3A resolution==
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The line below this paragraph, containing "STRUCTURE_2vuv", creates the "Structure Box" on the page.
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<StructureSection load='2vuv' size='340' side='right'caption='[[2vuv]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2vuv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Codakia_orbicularis Codakia orbicularis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VUV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VUV FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene></td></tr>
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{{STRUCTURE_2vuv| PDB=2vuv | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vuv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vuv OCA], [https://pdbe.org/2vuv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vuv RCSB], [https://www.ebi.ac.uk/pdbsum/2vuv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vuv ProSAT]</span></td></tr>
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</table>
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===CRYSTAL STRUCTURE OF CODAKINE AT 1.3A RESOLUTION===
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== Function ==
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[https://www.uniprot.org/uniprot/Q3KVL7_9BIVA Q3KVL7_9BIVA]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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The line below this paragraph, {{ABSTRACT_PUBMED_18687680}}, adds the Publication Abstract to the page
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 18687680 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vu/2vuv_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_18687680}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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2VUV is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Codakia_orbicularis Codakia orbicularis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VUV OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vuv ConSurf].
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<div style="clear:both"></div>
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==Reference==
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__TOC__
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High affinity interaction between a bivalve C-type lectin and a biantennary complex-type N-glycan revealed by crystallography and microcalorimetry., Gourdine JP, Cioci G, Miguet L, Unverzagt C, Varon Silva D, Varrot A, Gautier C, Smith-Ravin EJ, Imberty A, J Biol Chem. 2008 Aug 7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18687680 18687680]
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</StructureSection>
[[Category: Codakia orbicularis]]
[[Category: Codakia orbicularis]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Cioci, G C.]]
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[[Category: Cioci GC]]
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[[Category: Gauthier, C.]]
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[[Category: Gauthier C]]
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[[Category: Gourdine, J P.]]
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[[Category: Gourdine JP]]
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[[Category: Imberty, A.]]
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[[Category: Imberty A]]
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[[Category: Miguet, L.]]
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[[Category: Miguet L]]
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[[Category: Smith-Ravin, E J.]]
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[[Category: Smith-Ravin EJ]]
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[[Category: Unverzagt, C.]]
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[[Category: Unverzagt C]]
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[[Category: Varrot, A.]]
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[[Category: Varrot A]]
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[[Category: C-type]]
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[[Category: Codakine]]
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[[Category: Invertebrate]]
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[[Category: Lectin]]
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[[Category: Mannose]]
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[[Category: Sugar-binding protein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 20 11:24:58 2008''
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Current revision

Crystal structure of Codakine at 1.3A resolution

PDB ID 2vuv

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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