This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3e5n
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 3e5n is ON HOLD Authors: Doan, T.N.T., Kim, J.K., Kim, H.S., Ahn, Y.J., Kim, J.G., Lee, B.M., Kang, L.W. Description: Crystal strucutre of D-alanin...) |
|||
| (9 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of D-alanine-D-alanine ligase from Xanthomonas oryzae pv. oryzae KACC10331== | |
| + | <StructureSection load='3e5n' size='340' side='right'caption='[[3e5n]], [[Resolution|resolution]] 2.00Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[3e5n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanthomonas_oryzae_pv._oryzae_MAFF_311018 Xanthomonas oryzae pv. oryzae MAFF 311018]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E5N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E5N FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e5n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e5n OCA], [https://pdbe.org/3e5n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e5n RCSB], [https://www.ebi.ac.uk/pdbsum/3e5n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e5n ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e5/3e5n_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3e5n ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | + | ==See Also== | |
| - | + | *[[D-alanine-D-alanine ligase 3D structures|D-alanine-D-alanine ligase 3D structures]] | |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | + | [[Category: Large Structures]] | |
| + | [[Category: Xanthomonas oryzae pv. oryzae MAFF 311018]] | ||
| + | [[Category: Ahn YJ]] | ||
| + | [[Category: Doan TNT]] | ||
| + | [[Category: Kang LW]] | ||
| + | [[Category: Kim HS]] | ||
| + | [[Category: Kim JG]] | ||
| + | [[Category: Kim JK]] | ||
| + | [[Category: Lee BM]] | ||
Current revision
Crystal structure of D-alanine-D-alanine ligase from Xanthomonas oryzae pv. oryzae KACC10331
| |||||||||||

