This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2k5p

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:45, 9 May 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2k5p.jpg|left|200px]]
 
-
<!--
+
==NMR Solution Structure of a Thiamine Biosynthesis Protein from Geobacter Metallireducens: Northeast Structural Genomics Consortium Target GmR137==
-
The line below this paragraph, containing "STRUCTURE_2k5p", creates the "Structure Box" on the page.
+
<StructureSection load='2k5p' size='340' side='right'caption='[[2k5p]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2k5p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacter_metallireducens_GS-15 Geobacter metallireducens GS-15]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K5P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K5P FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k5p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k5p OCA], [https://pdbe.org/2k5p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k5p RCSB], [https://www.ebi.ac.uk/pdbsum/2k5p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k5p ProSAT], [https://www.topsan.org/Proteins/NESGC/2k5p TOPSAN]</span></td></tr>
-
{{STRUCTURE_2k5p| PDB=2k5p | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===NMR Solution Structure of a Thiamine Biosynthesis Protein from Geobacter Metallireducens: Northeast Structural Genomics Consortium Target GmR137===
+
[https://www.uniprot.org/uniprot/Q39VC5_GEOMG Q39VC5_GEOMG]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
2K5P is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K5P OCA].
+
<jmolCheckbox>
-
[[Category: Bacteria]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k5/2k5p_consurf.spt"</scriptWhenChecked>
-
[[Category: Single protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Acton, T B.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Baran, M C.]]
+
</jmolCheckbox>
-
[[Category: Gurla, S V.T.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2k5p ConSurf].
-
[[Category: Jiang, M.]]
+
<div style="clear:both"></div>
-
[[Category: Magliaqui, M.]]
+
__TOC__
-
[[Category: Mani, R.]]
+
</StructureSection>
-
[[Category: Montelione, G T.]]
+
[[Category: Geobacter metallireducens GS-15]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Large Structures]]
-
[[Category: Nair, R.]]
+
[[Category: Acton TB]]
-
[[Category: Rost, B.]]
+
[[Category: Baran MC]]
-
[[Category: Wang, H.]]
+
[[Category: Gurla SVT]]
-
[[Category: Xiao, R.]]
+
[[Category: Jiang M]]
-
[[Category: Biosynthetic protein]]
+
[[Category: Magliaqui M]]
-
[[Category: Geobacter metallireducen]]
+
[[Category: Mani R]]
-
[[Category: Gmr137]]
+
[[Category: Montelione GT]]
-
[[Category: Nesg]]
+
[[Category: Nair R]]
-
[[Category: Nmr]]
+
[[Category: Rost B]]
-
[[Category: Northeast structural genomics consortium]]
+
[[Category: Wang H]]
-
[[Category: Protein structure initiative]]
+
[[Category: Xiao R]]
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Thiamine biosynthesis]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 27 11:05:32 2008''
+

Current revision

NMR Solution Structure of a Thiamine Biosynthesis Protein from Geobacter Metallireducens: Northeast Structural Genomics Consortium Target GmR137

PDB ID 2k5p

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools