2vcd

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{{Seed}}
 
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[[Image:2vcd.jpg|left|200px]]
 
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==Solution structure of the FKBP-domain of Legionella pneumophila Mip in complex with rapamycin==
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The line below this paragraph, containing "STRUCTURE_2vcd", creates the "Structure Box" on the page.
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<StructureSection load='2vcd' size='340' side='right'caption='[[2vcd]], [[NMR_Ensembles_of_Models | 16 NMR models]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2vcd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_33152 Atcc 33152]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VCD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VCD FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=RAP:RAPAMYCIN+IMMUNOSUPPRESSANT+DRUG'>RAP</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">mip, lpg0791 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=446 ATCC 33152])</td></tr>
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{{STRUCTURE_2vcd| PDB=2vcd | SCENE= }}
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Peptidylprolyl_isomerase Peptidylprolyl isomerase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.2.1.8 5.2.1.8] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vcd OCA], [https://pdbe.org/2vcd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vcd RCSB], [https://www.ebi.ac.uk/pdbsum/2vcd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vcd ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[https://www.uniprot.org/uniprot/MIP_LEGPH MIP_LEGPH]] Essential virulence factor associated with macrophage infectivity. Exhibits PPIase activity.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vc/2vcd_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vcd ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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BACKGROUND: Legionella pneumphila is the causative agent of Legionnaires' disease. A major virulence factor of the pathogen is the homodimeric surface protein Mip. It shows peptidyl-prolyl cis/trans isomerase activty and is a receptor of FK506 and rapamycin, which both inhibit its enzymatic function. Insight into the binding process may be used for the design of novel Mip inhibitors as potential drugs against Legionnaires' disease. RESULTS: We have solved the solution structure of free Mip77-213 and the Mip77-213-rapamycin complex by NMR spectroscopy. Mip77-213 showed the typical FKBP-fold and only minor rearrangements upon binding of rapamycin. Apart from the configuration of a flexible hairpin loop, which is partly stabilized upon binding, the solution structure confirms the crystal structure. Comparisons to the structures of free FKBP12 and the FKBP12-rapamycin complex suggested an identical binding mode for both proteins. CONCLUSION: The structural similarity of the Mip-rapamycin and FKBP12-rapamycin complexes suggests that FKBP12 ligands may be promising starting points for the design of novel Mip inhibitors. The search for a novel drug against Legionnaires' disease may therefore benefit from the large variety of known FKBP12 inhibitors.
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===SOLUTION STRUCTURE OF THE FKBP-DOMAIN OF LEGIONELLA PNEUMOPHILA MIP IN COMPLEX WITH RAPAMYCIN===
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Solution structure of the Legionella pneumophila Mip-rapamycin complex.,Ceymann A, Horstmann M, Ehses P, Schweimer K, Paschke AK, Steinert M, Faber C BMC Struct Biol. 2008 Mar 17;8:17. PMID:18366641<ref>PMID:18366641</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2vcd" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_18366641}}, adds the Publication Abstract to the page
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*[[Peptidyl-prolyl cis-trans isomerase 3D structures|Peptidyl-prolyl cis-trans isomerase 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 18366641 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_18366641}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Atcc 33152]]
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2VCD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Legionella_pneumophila Legionella pneumophila]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VCD OCA].
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[[Category: Large Structures]]
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==Reference==
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Solution structure of the Legionella pneumophila Mip-rapamycin complex., Ceymann A, Horstmann M, Ehses P, Schweimer K, Paschke AK, Steinert M, Faber C, BMC Struct Biol. 2008 Mar 17;8:17. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18366641 18366641]
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[[Category: Legionella pneumophila]]
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[[Category: Peptidylprolyl isomerase]]
[[Category: Peptidylprolyl isomerase]]
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[[Category: Single protein]]
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[[Category: Ceymann, A]]
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[[Category: Ceymann, A.]]
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[[Category: Ehses, P]]
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[[Category: Ehses, P.]]
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[[Category: Faber, C]]
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[[Category: Faber, C.]]
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[[Category: Fischer, G]]
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[[Category: Fischer, G.]]
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[[Category: Horstmann, M]]
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[[Category: Horstmann, M.]]
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[[Category: Paschke, A K]]
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[[Category: Paschke, A K.]]
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[[Category: Roesch, P]]
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[[Category: Roesch, P.]]
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[[Category: Schweimer, K]]
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[[Category: Schweimer, K.]]
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[[Category: Fkbp]]
[[Category: Fkbp]]
[[Category: Fkbp-domain]]
[[Category: Fkbp-domain]]
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[[Category: Sirolimus]]
[[Category: Sirolimus]]
[[Category: Virulence]]
[[Category: Virulence]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 3 13:05:05 2008''
 

Current revision

Solution structure of the FKBP-domain of Legionella pneumophila Mip in complex with rapamycin

PDB ID 2vcd

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