3b72

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{{Seed}}
 
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[[Image:3b72.jpg|left|200px]]
 
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==Crystal structure of lysozyme folded in SDS and 2-methyl-2,4-pentanediol==
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The line below this paragraph, containing "STRUCTURE_3b72", creates the "Structure Box" on the page.
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<StructureSection load='3b72' size='340' side='right'caption='[[3b72]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3b72]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B72 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B72 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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{{STRUCTURE_3b72| PDB=3b72 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b72 OCA], [https://pdbe.org/3b72 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b72 RCSB], [https://www.ebi.ac.uk/pdbsum/3b72 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b72 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b7/3b72_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3b72 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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BACKGROUND: Recently, we reported a unique approach to preserve the activity of some proteins in the presence of the denaturing agent, Sodium Dodecyl Sulfate (SDS). This was made possible by addition of the amphipathic solvent 2,4-Methyl-2-PentaneDiol (MPD), used as protecting but also as refolding agent for these proteins. Although the persistence of the protein activity in the SDS/MPD mixture was clearly established, preservation of their structure was only speculative until now. RESULTS: In this paper, a detailed X-ray study addresses the pending question. Crystals of hen egg-white lysozyme were grown for the first time in the presence of MPD and denaturing concentrations of SDS. Depending on crystallization conditions, tetragonal crystals in complex with either SDS or MPD were collected. The conformation of both structures was very similar to the native lysozyme and the obtained complexes of SDS-lysozyme and MPD-lysozyme give some insights in the interplay of protein-SDS and protein-MPD interactions. CONCLUSION: This study clearly established the preservation of the enzyme structure in a SDS/MPD mixture. It is hypothesized that high concentrations of MPD would change the properties of SDS and lower or avoid interactions between the denaturant and the protein. These structural data therefore support the hypothesis that MPD avoids disruption of the enzyme structure by SDS and can protect proteins from SDS denaturation.
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===Crystal structure of lysozyme folded in SDS and 2-methyl-2,4-pentanediol===
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Protecting role of cosolvents in protein denaturation by SDS: a structural study.,Michaux C, Pouyez J, Wouters J, Prive GG BMC Struct Biol. 2008 Jun 3;8:29. PMID:18522744<ref>PMID:18522744</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3b72" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_18522744}}, adds the Publication Abstract to the page
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*[[Lysozyme 3D structures|Lysozyme 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 18522744 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_18522744}}
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__TOC__
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</StructureSection>
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==About this Structure==
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3B72 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B72 OCA].
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==Reference==
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Protecting role of cosolvents in protein denaturation by SDS: a structural study., Michaux C, Pouyez J, Wouters J, Prive GG, BMC Struct Biol. 2008 Jun 3;8:29. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18522744 18522744]
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[[Category: Gallus gallus]]
[[Category: Gallus gallus]]
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[[Category: Lysozyme]]
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[[Category: Large Structures]]
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[[Category: Single protein]]
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[[Category: Michaux C]]
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[[Category: Michaux, C.]]
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[[Category: Pouyez J]]
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[[Category: Pouyez, J.]]
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[[Category: Prive GG]]
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[[Category: Prive, G G.]]
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[[Category: Wouters J]]
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[[Category: Wouters, J.]]
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[[Category: Allergen]]
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[[Category: Antimicrobial]]
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[[Category: Bacteriolytic enzyme]]
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[[Category: Crystal structure]]
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[[Category: Glycosidase]]
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[[Category: Hen egg-white lysozyme]]
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[[Category: Hydrolase]]
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[[Category: Mpd]]
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[[Category: Protein-sds complex]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 10 10:45:34 2008''
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Current revision

Crystal structure of lysozyme folded in SDS and 2-methyl-2,4-pentanediol

PDB ID 3b72

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