3dr6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (01:44, 21 November 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3dr6.jpg|left|200px]]
 
-
<!--
+
==Structure of yncA, a putative ACETYLTRANSFERASE from Salmonella typhimurium==
-
The line below this paragraph, containing "STRUCTURE_3dr6", creates the "Structure Box" on the page.
+
<StructureSection load='3dr6' size='340' side='right'caption='[[3dr6]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3dr6]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DR6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DR6 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3dr6| PDB=3dr6 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dr6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dr6 OCA], [https://pdbe.org/3dr6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dr6 RCSB], [https://www.ebi.ac.uk/pdbsum/3dr6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dr6 ProSAT], [https://www.topsan.org/Proteins/CSGID/3dr6 TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Structure of yncA, a putative acteyltransferase from Salmonella typhimurium===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/MDDA_SALTY MDDA_SALTY] Plays a role in the resistance against the toxic effects of L-methionine sulfoximine (MSX), a rare amino acid which inhibits glutamine synthetase (GlnA). Catalyzes the acetylation of MSX. It can also use L-methionine sulfone (MSO) (PubMed:25368301). Also catalyzes the acylation of free L-amino acids using an acyl-CoA as acyl donor (By similarity).[UniProtKB:P76112]<ref>PMID:25368301</ref>
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3DR6 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Salmonella_typhimurium Salmonella typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DR6 OCA].
+
Check<jmol>
-
[[Category: Salmonella typhimurium]]
+
<jmolCheckbox>
-
[[Category: Single protein]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dr/3dr6_consurf.spt"</scriptWhenChecked>
-
[[Category: Anderson, W F.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Edwards, A M.]]
+
</jmolCheckbox>
-
[[Category: Onopriyenko, O.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dr6 ConSurf].
-
[[Category: Savchenko, A.]]
+
<div style="clear:both"></div>
-
[[Category: Singer, A U.]]
+
== References ==
-
[[Category: Skarina, T.]]
+
<references/>
-
[[Category: Acetyltransferase]]
+
__TOC__
-
[[Category: Center for structural genomics of infectious disease]]
+
</StructureSection>
-
[[Category: Csgid target]]
+
[[Category: Large Structures]]
-
[[Category: Essential gene]]
+
[[Category: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]]
-
[[Category: Idp00086]]
+
[[Category: Anderson WF]]
-
[[Category: Salmonella typhimurium]]
+
[[Category: Edwards AM]]
-
[[Category: Structural genomic]]
+
[[Category: Onopriyenko O]]
-
 
+
[[Category: Savchenko A]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 10 13:08:18 2008''
+
[[Category: Singer AU]]
 +
[[Category: Skarina T]]

Current revision

Structure of yncA, a putative ACETYLTRANSFERASE from Salmonella typhimurium

PDB ID 3dr6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools