This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3e9a

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:59, 30 August 2023) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3e9a.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from Vibrio cholerae O1 biovar eltor str. N16961==
-
The line below this paragraph, containing "STRUCTURE_3e9a", creates the "Structure Box" on the page.
+
<StructureSection load='3e9a' size='340' side='right'caption='[[3e9a]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3e9a]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae_O1_biovar_El_Tor Vibrio cholerae O1 biovar El Tor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E9A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E9A FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_3e9a| PDB=3e9a | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e9a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e9a OCA], [https://pdbe.org/3e9a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e9a RCSB], [https://www.ebi.ac.uk/pdbsum/3e9a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e9a ProSAT], [https://www.topsan.org/Proteins/CSGID/3e9a TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/KDSA_VIBC3 KDSA_VIBC3]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e9/3e9a_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3e9a ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from Vibrio cholerae O1 biovar eltor str. N16961===
+
==See Also==
-
 
+
*[[Kdo-8-phosphate synthase|Kdo-8-phosphate synthase]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
3E9A is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae_o1_biovar_el_tor Vibrio cholerae o1 biovar el tor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E9A OCA].
+
[[Category: Large Structures]]
-
[[Category: 3-deoxy-8-phosphooctulonate synthase]]
+
[[Category: Vibrio cholerae O1 biovar El Tor]]
-
[[Category: Single protein]]
+
[[Category: Anderson WF]]
-
[[Category: Vibrio cholerae o1 biovar el tor]]
+
[[Category: Joachimiak A]]
-
[[Category: Anderson, W F.]]
+
[[Category: Kwon K]]
-
[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+
[[Category: Mulligan R]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Nocek B]]
-
[[Category: Kwon, K.]]
+
-
[[Category: Mulligan, R.]]
+
-
[[Category: Nocek, B.]]
+
-
[[Category: 2-dehydro-3-deoxyphosphooctonate aldolase]]
+
-
[[Category: Center for structural genomics of infectious disease]]
+
-
[[Category: Csgid]]
+
-
[[Category: Cytoplasm]]
+
-
[[Category: Lipopolysaccharide biosynthesis]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Transferase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 17 14:38:41 2008''
+

Current revision

Crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from Vibrio cholerae O1 biovar eltor str. N16961

PDB ID 3e9a

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3e9a"
Personal tools