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3dh7

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{{Seed}}
 
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[[Image:3dh7.jpg|left|200px]]
 
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==Structure of T. thermophilus IDI-2 in complex with PPi==
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The line below this paragraph, containing "STRUCTURE_3dh7", creates the "Structure Box" on the page.
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<StructureSection load='3dh7' size='340' side='right'caption='[[3dh7]], [[Resolution|resolution]] 2.97&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3dh7]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DH7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DH7 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.97&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene></td></tr>
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{{STRUCTURE_3dh7| PDB=3dh7 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dh7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dh7 OCA], [https://pdbe.org/3dh7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dh7 RCSB], [https://www.ebi.ac.uk/pdbsum/3dh7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dh7 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q53W52_THET8 Q53W52_THET8] Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).[HAMAP-Rule:MF_00354]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dh/3dh7_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dh7 ConSurf].
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<div style="clear:both"></div>
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===Structure of T. thermophilus IDI-2 in complex with PPi===
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==See Also==
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*[[Isopentenyl-diphosphate delta-isomerase|Isopentenyl-diphosphate delta-isomerase]]
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__TOC__
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</StructureSection>
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The line below this paragraph, {{ABSTRACT_PUBMED_18693754}}, adds the Publication Abstract to the page
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[[Category: Large Structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 18693754 is the PubMed ID number.
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[[Category: Thermus thermophilus HB8]]
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[[Category: Wouters J]]
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{{ABSTRACT_PUBMED_18693754}}
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[[Category: De Ruyck J]]
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==About this Structure==
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3DH7 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DH7 OCA].
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==Reference==
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Crystal structure of type 2 isopentenyl diphosphate isomerase from Thermus thermophilus in complex with inorganic pyrophosphate., de Ruyck J, Pouyez J, Rothman SC, Poulter D, Wouters J, Biochemistry. 2008 Sep 2;47(35):9051-3. Epub 2008 Aug 12. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18693754 18693754]
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[[Category: Single protein]]
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[[Category: Thermus thermophilus hb8]]
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[[Category: Ruyck, J de.]]
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[[Category: Wouters, J.]]
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[[Category: Complex]]
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[[Category: Crystal structure]]
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[[Category: Idi]]
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[[Category: Isomerase]]
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[[Category: Plasmid]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 24 10:41:15 2008''
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Current revision

Structure of T. thermophilus IDI-2 in complex with PPi

PDB ID 3dh7

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