This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3bsm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:31, 21 February 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3bsm.png|left|200px]]
 
-
<!--
+
==Crystal structure of D-mannonate dehydratase from Chromohalobacter salexigens==
-
The line below this paragraph, containing "STRUCTURE_3bsm", creates the "Structure Box" on the page.
+
<StructureSection load='3bsm' size='340' side='right'caption='[[3bsm]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3bsm]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Chromohalobacter_salexigens_DSM_3043 Chromohalobacter salexigens DSM 3043]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BSM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BSM FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bsm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bsm OCA], [https://pdbe.org/3bsm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bsm RCSB], [https://www.ebi.ac.uk/pdbsum/3bsm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bsm ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3bsm TOPSAN]</span></td></tr>
-
{{STRUCTURE_3bsm| PDB=3bsm | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DMGD_CHRSD DMGD_CHRSD] Has low dehydratase activity with D-mannonate and D-gluconate, suggesting that these are not physiological substrates and that it has no significant role in the in vivo degradation of these compounds. Has no detectable activity with a panel of 70 other acid sugars (in vitro).<ref>PMID:24697546</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bs/3bsm_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bsm ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of D-mannonate dehydratase from Chromohalobacter salexigens===
+
==See Also==
-
 
+
*[[Mandelate racemase/muconate lactonizing enzyme 3D structures|Mandelate racemase/muconate lactonizing enzyme 3D structures]]
-
 
+
== References ==
-
==About this Structure==
+
<references/>
-
3BSM is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Chromohalobacter_salexigens_dsm_3043 Chromohalobacter salexigens dsm 3043]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BSM OCA].
+
__TOC__
-
[[Category: Chromohalobacter salexigens dsm 3043]]
+
</StructureSection>
-
[[Category: Single protein]]
+
[[Category: Chromohalobacter salexigens DSM 3043]]
-
[[Category: Almo, S C.]]
+
[[Category: Large Structures]]
-
[[Category: Burley, S K.]]
+
[[Category: Almo SC]]
-
[[Category: Fedorov, A A.]]
+
[[Category: Burley SK]]
-
[[Category: Fedorov, E V.]]
+
[[Category: Fedorov AA]]
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[[Category: Fedorov EV]]
-
[[Category: Sauder, J M.]]
+
[[Category: Sauder JM]]
-
[[Category: Toro, R.]]
+
[[Category: Toro R]]
-
[[Category: Clone 9262h1bct8p1]]
+
-
[[Category: D-mannonate dehydratase]]
+
-
[[Category: Lyase]]
+
-
[[Category: New york structural genomix research consortium]]
+
-
[[Category: Nysgxrc]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Target 9262h]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 16:43:18 2008''
+

Current revision

Crystal structure of D-mannonate dehydratase from Chromohalobacter salexigens

PDB ID 3bsm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3bsm"
Personal tools