This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1rxe

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1rxe" size="450" color="white" frame="true" align="right" spinBox="true" caption="1rxe, resolution 1.7&Aring;" /> '''ArsC complexed with M...)
Current revision (08:27, 1 May 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1rxe.gif|left|200px]]<br /><applet load="1rxe" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1rxe, resolution 1.7&Aring;" />
 
-
'''ArsC complexed with MNB'''<br />
 
-
==Overview==
+
==ArsC complexed with MNB==
-
Structural insights into formation of the complex between the ubiquitous, thiol-disulfide oxidoreductase thioredoxin and its oxidized substrate are, under-documented owing to its entropical instability. In vitro, it is, possible via a reaction with 5,5'-dithiobis-(2-nitrobenzoic acid) to make, a stable mixed-disulfide complex between thioredoxin from Staphylococcus, aureus and one of its substrates, oxidized pI258 arsenate reductase (ArsC), from S. aureus. In the absence of the crystal structure of an, ArsC-thioredoxin complex, the structures of two precursors of the complex, the ArsC triple mutant ArsC C10SC15AC82S and its 5-thio-2-nitrobenzoic, acid (TNB) adduct, were determined. The ArsC triple mutant has a structure, very similar to that of the reduced form of wild-type ArsC, with a folded, redox helix and a buried catalytic Cys89. In the adduct form, the TNB, molecule is buried in a hydrophobic pocket and the disulfide bridge, between TNB and Cys89 is sterically inaccessible to thioredoxin. In order, to form a mixed disulfide between ArsC and thioredoxin, a change in the, orientation of the TNB-Cys89 disulfide in the structure is necessary.
+
<StructureSection load='1rxe' size='340' side='right'caption='[[1rxe]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1rxe]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RXE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RXE FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=LCP:PERCHLORATE+ION'>LCP</scene>, <scene name='pdbligand=MNB:5-MERCAPTO-2-NITRO-BENZOIC+ACID'>MNB</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rxe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rxe OCA], [https://pdbe.org/1rxe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rxe RCSB], [https://www.ebi.ac.uk/pdbsum/1rxe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rxe ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ARSC_STAAU ARSC_STAAU] Reduces arsenate [As(V)] to arsenite [As(III)] and dephosphorylates tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates. Could switch between different functions in different circumstances.[HAMAP-Rule:MF_01624]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rx/1rxe_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rxe ConSurf].
 +
<div style="clear:both"></div>
-
==About this Structure==
+
==See Also==
-
1RXE is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus] with K, LCP and MNB as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Arsenate_reductase_(glutaredoxin) Arsenate reductase (glutaredoxin)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.20.4.1 1.20.4.1] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1RXE OCA].
+
*[[Arsenate reductase 3D structures|Arsenate reductase 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
The structure of a triple mutant of pI258 arsenate reductase from Staphylococcus aureus and its 5-thio-2-nitrobenzoic acid adduct., Messens J, Van Molle I, Vanhaesebrouck P, Van Belle K, Wahni K, Martins JC, Wyns L, Loris R, Acta Crystallogr D Biol Crystallogr. 2004 Jun;60(Pt 6):1180-4. Epub 2004, May 21. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15159594 15159594]
+
[[Category: Large Structures]]
-
[[Category: Arsenate reductase (glutaredoxin)]]
+
-
[[Category: Single protein]]
+
[[Category: Staphylococcus aureus]]
[[Category: Staphylococcus aureus]]
-
[[Category: Belle, K.Van.]]
+
[[Category: Limbourg M]]
-
[[Category: Limbourg, M.]]
+
[[Category: Loris R]]
-
[[Category: Loris, R.]]
+
[[Category: Martins JC]]
-
[[Category: Martins, J.C.]]
+
[[Category: Messens J]]
-
[[Category: Messens, J.]]
+
[[Category: Van Belle K]]
-
[[Category: Molle, I.Van.]]
+
[[Category: Van Molle I]]
-
[[Category: Vanhaesebrouck, P.]]
+
[[Category: Vanhaesebrouck P]]
-
[[Category: Wahni, K.]]
+
[[Category: Wahni K]]
-
[[Category: Wyns, L.]]
+
[[Category: Wyns L]]
-
[[Category: K]]
+
-
[[Category: LCP]]
+
-
[[Category: MNB]]
+
-
[[Category: 5-mercapto-2-nitrobenzoic acid]]
+
-
[[Category: 5-thio-2-nitrobenzoic acid]]
+
-
[[Category: arsc]]
+
-
[[Category: mixed disulphide]]
+
-
[[Category: mnb]]
+
-
[[Category: tnb]]
+
-
 
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 01:55:41 2007''
+

Current revision

ArsC complexed with MNB

PDB ID 1rxe

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools