2ot9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (01:17, 21 November 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2ot9.png|left|200px]]
 
-
<!--
+
==Crystal structure of YaeQ protein from Pseudomonas syringae==
-
The line below this paragraph, containing "STRUCTURE_2ot9", creates the "Structure Box" on the page.
+
<StructureSection load='2ot9' size='340' side='right'caption='[[2ot9]], [[Resolution|resolution]] 1.97&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2ot9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._tomato_str._DC3000 Pseudomonas syringae pv. tomato str. DC3000]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OT9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OT9 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.97&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SRT:S,R+MESO-TARTARIC+ACID'>SRT</scene></td></tr>
-
{{STRUCTURE_2ot9| PDB=2ot9 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ot9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ot9 OCA], [https://pdbe.org/2ot9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ot9 RCSB], [https://www.ebi.ac.uk/pdbsum/2ot9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ot9 ProSAT], [https://www.topsan.org/Proteins/MCSG/2ot9 TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of YaeQ protein from Pseudomonas syringae===
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
2OT9 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._tomato Pseudomonas syringae pv. tomato]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OT9 OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ot/2ot9_consurf.spt"</scriptWhenChecked>
-
[[Category: Pseudomonas syringae pv. tomato]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Single protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Clancy, S.]]
+
</jmolCheckbox>
-
[[Category: Joachimiak, A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ot9 ConSurf].
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
<div style="clear:both"></div>
-
[[Category: Wu, R.]]
+
__TOC__
-
[[Category: Mcsg]]
+
</StructureSection>
-
[[Category: Midwest center for structural genomic]]
+
[[Category: Large Structures]]
-
[[Category: Protein structure initiative]]
+
[[Category: Pseudomonas syringae pv. tomato str. DC3000]]
-
[[Category: Pseudomonas syringae]]
+
[[Category: Clancy S]]
-
[[Category: Psi-2]]
+
[[Category: Joachimiak A]]
-
[[Category: Structural genomic]]
+
[[Category: Wu R]]
-
[[Category: Yaeq protein]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 17:23:32 2008''
+

Current revision

Crystal structure of YaeQ protein from Pseudomonas syringae

PDB ID 2ot9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2ot9"
Personal tools