This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ceb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:29, 1 February 2023) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3ceb.png|left|200px]]
 
-
<!--
+
==Crystal structure of a putative 4-amino-4-deoxychorismate lyase (hs_0128) from haemophilus somnus 129pt at 2.40 A resolution==
-
The line below this paragraph, containing "STRUCTURE_3ceb", creates the "Structure Box" on the page.
+
<StructureSection load='3ceb' size='340' side='right'caption='[[3ceb]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3ceb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Histophilus_somni_129PT Histophilus somni 129PT]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CEB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CEB FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ceb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ceb OCA], [https://pdbe.org/3ceb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ceb RCSB], [https://www.ebi.ac.uk/pdbsum/3ceb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ceb ProSAT], [https://www.topsan.org/Proteins/JCSG/3ceb TOPSAN]</span></td></tr>
-
{{STRUCTURE_3ceb| PDB=3ceb | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Crystal structure of D-aminoacid aminotransferase-like PLP-dependent enzyme (YP_718332.1) from Haemophilus somnus 129PT at 2.40 A resolution===
+
[https://www.uniprot.org/uniprot/Q0I0Z6_HAES1 Q0I0Z6_HAES1]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3CEB is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Haemophilus_somnus_129pt Haemophilus somnus 129pt]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CEB OCA].
+
<jmolCheckbox>
-
[[Category: Haemophilus somnus 129pt]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ce/3ceb_consurf.spt"</scriptWhenChecked>
-
[[Category: Single protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: D-aminoacid aminotransferase-like plp-dependent enzyme]]
+
</jmolCheckbox>
-
[[Category: Jcsg]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ceb ConSurf].
-
[[Category: Joint center for structural genomic]]
+
<div style="clear:both"></div>
-
[[Category: Protein structure initiative]]
+
__TOC__
-
[[Category: Psi-2]]
+
</StructureSection>
-
[[Category: Structural genomic]]
+
[[Category: Histophilus somni 129PT]]
-
[[Category: Yp_718332 1]]
+
[[Category: Large Structures]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 19:31:25 2008''
+

Current revision

Crystal structure of a putative 4-amino-4-deoxychorismate lyase (hs_0128) from haemophilus somnus 129pt at 2.40 A resolution

PDB ID 3ceb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools