1vdl

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{{Seed}}
 
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[[Image:1vdl.png|left|200px]]
 
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==Solution Structure of RSGI RUH-013, a UBA domain in Mouse cDNA==
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The line below this paragraph, containing "STRUCTURE_1vdl", creates the "Structure Box" on the page.
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<StructureSection load='1vdl' size='340' side='right'caption='[[1vdl]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1vdl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VDL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VDL FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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-->
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vdl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vdl OCA], [https://pdbe.org/1vdl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vdl RCSB], [https://www.ebi.ac.uk/pdbsum/1vdl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vdl ProSAT], [https://www.topsan.org/Proteins/RSGI/1vdl TOPSAN]</span></td></tr>
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{{STRUCTURE_1vdl| PDB=1vdl | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/UBP25_MOUSE UBP25_MOUSE] Deubiquitinating enzyme that hydrolyzes ubiquitin moieties conjugated to substrates and thus, functions to process newly synthesized Ubiquitin, to recycle ubiquitin molecules or to edit polyubiquitin chains and prevents proteasomal degradation of substrates. Hydrolyzes both 'Lys-48'- and 'Lys-63'-linked tetraubiquitin chains (By similarity).<ref>PMID:16501887</ref> The muscle-specific isoform (USP25m) may have a role in the regulation of muscular differentiation and function.<ref>PMID:16501887</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/1vdl_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vdl ConSurf].
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<div style="clear:both"></div>
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===Solution Structure of RSGI RUH-013, a UBA domain in Mouse cDNA===
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==See Also==
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*[[Thioesterase 3D structures|Thioesterase 3D structures]]
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== References ==
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==About this Structure==
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<references/>
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1VDL is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VDL OCA].
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
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[[Category: Single protein]]
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[[Category: Doi-Katayama Y]]
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[[Category: Ubiquitin thiolesterase]]
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[[Category: Hirota H]]
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[[Category: Doi-Katayama, Y.]]
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[[Category: Kigawa T]]
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[[Category: Hirota, H.]]
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[[Category: Koshiba S]]
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[[Category: Kigawa, T.]]
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[[Category: Saito K]]
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[[Category: Koshiba, S.]]
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[[Category: Yokoyama S]]
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[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
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[[Category: Saito, K.]]
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[[Category: Yokoyama, S.]]
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[[Category: Mouse cdna]]
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[[Category: Riken structural genomics/proteomics initiative]]
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[[Category: Rsgi]]
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[[Category: Structural genomic]]
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[[Category: Uba domain]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 19:44:04 2008''
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Current revision

Solution Structure of RSGI RUH-013, a UBA domain in Mouse cDNA

PDB ID 1vdl

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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