2htd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:35, 11 September 2015) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
+
==CRYSTAL STRUCTURE OF A PUTATIVE PYRIDOXAMINE 5'-PHOSPHATE OXIDASE (LDB0262) FROM LACTOBACILLUS DELBRUECKII SUBSP. AT 1.60 A RESOLUTION==
-
[[Image:2htd.png|left|200px]]
+
<StructureSection load='2htd' size='340' side='right' caption='[[2htd]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
 
+
== Structural highlights ==
-
<!--
+
<table><tr><td colspan='2'>[[2htd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Lacdb Lacdb]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HTD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2HTD FirstGlance]. <br>
-
The line below this paragraph, containing "STRUCTURE_2htd", creates the "Structure Box" on the page.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ZP_00387536.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=321956 LACDB])</td></tr>
-
or leave the SCENE parameter empty for the default display.
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2htd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2htd OCA], [http://pdbe.org/2htd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2htd RCSB], [http://www.ebi.ac.uk/pdbsum/2htd PDBsum], [http://www.topsan.org/Proteins/JCSG/2htd TOPSAN]</span></td></tr>
-
-->
+
</table>
-
{{STRUCTURE_2htd| PDB=2htd | SCENE= }}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
===Crystal structure of Predicted flavin-nucleotide-binding protein from COG3576 family structurally related to pyridoxine 5'-phosphate oxidase (ZP_00387536.1) from Lactobacillus delbrueckii bulgaricus ATCC BAA-365 at 1.60 A resolution===
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ht/2htd_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
2HTD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Lactobacillus_delbrueckii_subsp._bulgaricus Lactobacillus delbrueckii subsp. bulgaricus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HTD OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Lactobacillus delbrueckii subsp. bulgaricus]]
+
</jmolCheckbox>
-
[[Category: Single protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
<div style="clear:both"></div>
-
[[Category: Jcsg]]
+
__TOC__
-
[[Category: Joint center for structural genomic]]
+
</StructureSection>
-
[[Category: Predicted flavin-nucleotide-binding protein from cog3576 family structurally related to pyridoxine 5'-phosphate oxidase]]
+
[[Category: Lacdb]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
[[Category: Structural genomic]]
[[Category: Structural genomic]]
-
[[Category: Zp_00387536 1]]
+
[[Category: Jcsg]]
-
 
+
[[Category: Oxidoreductase]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 20:05:50 2008''
+
[[Category: PSI, Protein structure initiative]]
 +
[[Category: Putative pyridoxamine 5'-phosphate oxidase]]

Current revision

CRYSTAL STRUCTURE OF A PUTATIVE PYRIDOXAMINE 5'-PHOSPHATE OXIDASE (LDB0262) FROM LACTOBACILLUS DELBRUECKII SUBSP. AT 1.60 A RESOLUTION

2htd, resolution 1.60Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2htd"
Personal tools