1s64

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(New page: 200px<br /><applet load="1s64" size="450" color="white" frame="true" align="right" spinBox="true" caption="1s64, resolution 2.55&Aring;" /> '''Rat protein geranylg...)
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[[Image:1s64.gif|left|200px]]<br /><applet load="1s64" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1s64, resolution 2.55&Aring;" />
 
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'''Rat protein geranylgeranyltransferase type-I complexed with L-778,123 and a sulfate anion'''<br />
 
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==Overview==
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==Rat protein geranylgeranyltransferase type-I complexed with L-778,123 and a sulfate anion==
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Many signal transduction proteins that control growth, differentiation, and transformation, including Ras GTPase family members, require the, covalent attachment of a lipid group by protein farnesyltransferase, (FTase) or protein geranylgeranyltransferase type-I (GGTase-I) for proper, function and for the transforming activity of oncogenic mutants. FTase, inhibitors are a new class of potential cancer therapeutics under, evaluation in human clinical trials. Here, we present crystal structures, of the clinical candidate L-778,123 complexed with mammalian FTase and, complexed with the related GGTase-I enzyme. Although FTase and GGTase-I, have very similar active sites, L-778,123 adopts different binding modes, in the two enzymes; in FTase, L-778,123 is competitive with the protein, substrate, whereas in GGTase-I, L-778,123 is competitive with the lipid, substrate and inhibitor binding is synergized by tetrahedral anions. A, comparison of these complexes reveals that small differences in protein, structure can dramatically affect inhibitor binding and selectivity. These, structures should facilitate the design of more specific inhibitors toward, FTase or GGTase-I. Finally, the binding of a drug and anion together could, be applicable for developing new classes of inhibitors.
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<StructureSection load='1s64' size='340' side='right'caption='[[1s64]], [[Resolution|resolution]] 2.55&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1s64]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S64 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1S64 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.55&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=778:4-[(5-{[4-(3-CHLOROPHENYL)-3-OXOPIPERAZIN-1-YL]METHYL}-1H-IMIDAZOL-1-YL)METHYL]BENZONITRILE'>778</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1s64 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1s64 OCA], [https://pdbe.org/1s64 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1s64 RCSB], [https://www.ebi.ac.uk/pdbsum/1s64 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1s64 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/FNTA_RAT FNTA_RAT] Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate. Through RAC1 prenylation and activation may positively regulate neuromuscular junction development downstream of MUSK (By similarity).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/s6/1s64_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1s64 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Many signal transduction proteins that control growth, differentiation, and transformation, including Ras GTPase family members, require the covalent attachment of a lipid group by protein farnesyltransferase (FTase) or protein geranylgeranyltransferase type-I (GGTase-I) for proper function and for the transforming activity of oncogenic mutants. FTase inhibitors are a new class of potential cancer therapeutics under evaluation in human clinical trials. Here, we present crystal structures of the clinical candidate L-778,123 complexed with mammalian FTase and complexed with the related GGTase-I enzyme. Although FTase and GGTase-I have very similar active sites, L-778,123 adopts different binding modes in the two enzymes; in FTase, L-778,123 is competitive with the protein substrate, whereas in GGTase-I, L-778,123 is competitive with the lipid substrate and inhibitor binding is synergized by tetrahedral anions. A comparison of these complexes reveals that small differences in protein structure can dramatically affect inhibitor binding and selectivity. These structures should facilitate the design of more specific inhibitors toward FTase or GGTase-I. Finally, the binding of a drug and anion together could be applicable for developing new classes of inhibitors.
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==About this Structure==
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Crystallographic analysis reveals that anticancer clinical candidate L-778,123 inhibits protein farnesyltransferase and geranylgeranyltransferase-I by different binding modes.,Reid TS, Long SB, Beese LS Biochemistry. 2004 Jul 20;43(28):9000-8. PMID:15248757<ref>PMID:15248757</ref>
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1S64 is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus] with ZN, CL, SO4, 778 and MES as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Protein_geranylgeranyltransferase_type_I Protein geranylgeranyltransferase type I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.59 2.5.1.59] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1S64 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Crystallographic analysis reveals that anticancer clinical candidate L-778,123 inhibits protein farnesyltransferase and geranylgeranyltransferase-I by different binding modes., Reid TS, Long SB, Beese LS, Biochemistry. 2004 Jul 20;43(28):9000-8. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15248757 15248757]
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</div>
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[[Category: Protein complex]]
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<div class="pdbe-citations 1s64" style="background-color:#fffaf0;"></div>
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[[Category: Protein geranylgeranyltransferase type I]]
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[[Category: Rattus norvegicus]]
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[[Category: Beese, L.S.]]
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[[Category: Long, S.B.]]
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[[Category: Reid, T.S.]]
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[[Category: 778]]
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[[Category: CL]]
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[[Category: MES]]
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[[Category: SO4]]
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[[Category: ZN]]
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[[Category: 123]]
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[[Category: drug]]
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[[Category: l-778]]
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[[Category: lipid modification]]
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[[Category: protein geranylgeranyltransferase type-i]]
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[[Category: protein prenylation]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 02:08:37 2007''
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==See Also==
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*[[Geranylgeranyl transferase 3D structures|Geranylgeranyl transferase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Rattus norvegicus]]
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[[Category: Beese LS]]
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[[Category: Long SB]]
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[[Category: Reid TS]]

Current revision

Rat protein geranylgeranyltransferase type-I complexed with L-778,123 and a sulfate anion

PDB ID 1s64

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