This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ddj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:32, 1 February 2023) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3ddj.png|left|200px]]
 
-
<!--
+
==Crystal structure of a cbs domain-containing protein in complex with amp (sso3205) from sulfolobus solfataricus at 1.80 A resolution==
-
The line below this paragraph, containing "STRUCTURE_3ddj", creates the "Structure Box" on the page.
+
<StructureSection load='3ddj' size='340' side='right'caption='[[3ddj]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3ddj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharolobus_solfataricus Saccharolobus solfataricus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DDJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DDJ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ddj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ddj OCA], [https://pdbe.org/3ddj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ddj RCSB], [https://www.ebi.ac.uk/pdbsum/3ddj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ddj ProSAT], [https://www.topsan.org/Proteins/JCSG/3ddj TOPSAN]</span></td></tr>
-
{{STRUCTURE_3ddj| PDB=3ddj | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Crystal structure of CBS domain-containing protein in complex with AMP (NP_344512.1) from SULFOLOBUS SOLFATARICUS at 1.80 A resolution===
+
[https://www.uniprot.org/uniprot/Q97U20_SACS2 Q97U20_SACS2]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3DDJ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Sulfolobus_solfataricus Sulfolobus solfataricus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DDJ OCA].
+
<jmolCheckbox>
-
[[Category: Single protein]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dd/3ddj_consurf.spt"</scriptWhenChecked>
-
[[Category: Sulfolobus solfataricus]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Cbs domain]]
+
</jmolCheckbox>
-
[[Category: Cbs domain pair]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ddj ConSurf].
-
[[Category: Cbs domain-containing protein in complex with amp]]
+
<div style="clear:both"></div>
-
[[Category: Jcsg]]
+
__TOC__
-
[[Category: Joint center for structural genomic]]
+
</StructureSection>
-
[[Category: Np_344512 1]]
+
[[Category: Large Structures]]
-
[[Category: Protein structure initiative]]
+
[[Category: Saccharolobus solfataricus]]
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Unknown function]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 21:13:44 2008''
+

Current revision

Crystal structure of a cbs domain-containing protein in complex with amp (sso3205) from sulfolobus solfataricus at 1.80 A resolution

PDB ID 3ddj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3ddj"
Personal tools