This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2z00

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:54, 29 July 2020) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2z00.png|left|200px]]
 
-
<!--
+
==Crystal structure of dihydroorotase from Thermus thermophilus==
-
The line below this paragraph, containing "STRUCTURE_2z00", creates the "Structure Box" on the page.
+
<StructureSection load='2z00' size='340' side='right'caption='[[2z00]], [[Resolution|resolution]] 2.42&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2z00]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z00 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2Z00 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_2z00| PDB=2z00 | SCENE= }}
+
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Dihydroorotase Dihydroorotase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.2.3 3.5.2.3] </span></td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2z00 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z00 OCA], [http://pdbe.org/2z00 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2z00 RCSB], [http://www.ebi.ac.uk/pdbsum/2z00 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2z00 ProSAT], [http://www.topsan.org/Proteins/RSGI/2z00 TOPSAN]</span></td></tr>
-
===Crystal structure of dihydroorotase from Thermus thermophilus===
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
2Z00 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z00 OCA].
+
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z0/2z00_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2z00 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Dihydroorotase]]
[[Category: Dihydroorotase]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Thermus thermophilus]]
+
[[Category: Thet8]]
-
[[Category: Baba, S.]]
+
[[Category: Baba, S]]
-
[[Category: Kanagawa, M.]]
+
[[Category: Kanagawa, M]]
-
[[Category: Kawai, G.]]
+
[[Category: Kawai, G]]
-
[[Category: Kuramitsu, S.]]
+
[[Category: Kuramitsu, S]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Structural genomic]]
-
[[Category: Sampei, G.]]
+
[[Category: Sampei, G]]
-
[[Category: Yokoyama, S.]]
+
[[Category: Yokoyama, S]]
[[Category: Hydrolase]]
[[Category: Hydrolase]]
[[Category: Metal-binding]]
[[Category: Metal-binding]]
Line 30: Line 36:
[[Category: Nppsfa]]
[[Category: Nppsfa]]
[[Category: Pyrimidine biosynthesis]]
[[Category: Pyrimidine biosynthesis]]
-
[[Category: Riken structural genomics/proteomics initiative]]
 
[[Category: Rsgi]]
[[Category: Rsgi]]
-
[[Category: Structural genomic]]
 
[[Category: Zinc binding protein]]
[[Category: Zinc binding protein]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 22:01:33 2008''
 

Current revision

Crystal structure of dihydroorotase from Thermus thermophilus

PDB ID 2z00

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools