This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2k4v

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:44, 1 May 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2k4v.png|left|200px]]
 
-
<!--
+
==Solution structure of uncharacterized protein PA1076 from Pseudomonas aeruginosa. Northeast Structural Genomics Consortium (NESG) target PaT3, Ontario Center for Structural Proteomics target PA1076 .==
-
The line below this paragraph, containing "STRUCTURE_2k4v", creates the "Structure Box" on the page.
+
<StructureSection load='2k4v' size='340' side='right'caption='[[2k4v]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2k4v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K4V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K4V FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k4v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k4v OCA], [https://pdbe.org/2k4v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k4v RCSB], [https://www.ebi.ac.uk/pdbsum/2k4v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k4v ProSAT], [https://www.topsan.org/Proteins/NESGC/2k4v TOPSAN]</span></td></tr>
-
{{STRUCTURE_2k4v| PDB=2k4v | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Solution structure of uncharacterized protein PA1076 from Pseudomonas aeruginosa. Northeast Structural Genomics Consortium (NESG) target PaT3, Ontario Center for Structural Proteomics target PA1076 .===
+
[https://www.uniprot.org/uniprot/Q9I4Q3_PSEAE Q9I4Q3_PSEAE]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
2K4V is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K4V OCA].
+
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k4/2k4v_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2k4v ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Pseudomonas aeruginosa]]
[[Category: Pseudomonas aeruginosa]]
-
[[Category: Single protein]]
+
[[Category: Arrowsmith CH]]
-
[[Category: Arrowsmith, C H.]]
+
[[Category: Fares C]]
-
[[Category: Fares, C.]]
+
[[Category: Gutmanas A]]
-
[[Category: Gutmanas, A.]]
+
[[Category: Lemak A]]
-
[[Category: Lemak, A.]]
+
[[Category: Montelione GT]]
-
[[Category: Montelione, G T.]]
+
[[Category: Semesi A]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Yee A]]
-
[[Category: OCSP, Ontario Centre for Structural Proteomics.]]
+
-
[[Category: Semesi, A.]]
+
-
[[Category: Yee, A.]]
+
-
[[Category: Nesg]]
+
-
[[Category: Northeast structural genomics consortium]]
+
-
[[Category: Ocsp]]
+
-
[[Category: Ontario centre for structural proteomic]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Unknown function]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 22:10:31 2008''
+

Current revision

Solution structure of uncharacterized protein PA1076 from Pseudomonas aeruginosa. Northeast Structural Genomics Consortium (NESG) target PaT3, Ontario Center for Structural Proteomics target PA1076 .

PDB ID 2k4v

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools