2otd

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{{Seed}}
 
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[[Image:2otd.png|left|200px]]
 
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==The crystal structure of the glycerophosphodiester phosphodiesterase from Shigella flexneri 2a==
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The line below this paragraph, containing "STRUCTURE_2otd", creates the "Structure Box" on the page.
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<StructureSection load='2otd' size='340' side='right'caption='[[2otd]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2otd]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Shigella_flexneri Shigella flexneri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OTD FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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{{STRUCTURE_2otd| PDB=2otd | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2otd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otd OCA], [https://pdbe.org/2otd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2otd RCSB], [https://www.ebi.ac.uk/pdbsum/2otd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2otd ProSAT], [https://www.topsan.org/Proteins/MCSG/2otd TOPSAN]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ot/2otd_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2otd ConSurf].
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<div style="clear:both"></div>
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===The crystal structure of the glycerophosphodiester phosphodiesterase from Shigella flexneri 2a===
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==See Also==
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*[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]]
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__TOC__
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==About this Structure==
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</StructureSection>
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2OTD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Shigella_flexneri Shigella flexneri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTD OCA].
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[[Category: Large Structures]]
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[[Category: Phosphodiesterase I]]
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[[Category: Shigella flexneri]]
[[Category: Shigella flexneri]]
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[[Category: Single protein]]
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[[Category: Clancy S]]
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[[Category: Clancy, S.]]
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[[Category: Jiang S]]
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[[Category: Jiang, S.]]
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[[Category: Joachimiak A]]
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[[Category: Joachimiak, A.]]
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[[Category: Wu R]]
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[[Category: MCSG, Midwest Center for Structural Genomics.]]
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[[Category: Zhang R]]
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[[Category: Wu, R.]]
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[[Category: Zhang, R.]]
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[[Category: Glycerophosphodiester phosphodiesterase]]
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[[Category: Mcsg]]
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[[Category: Midwest center for structural genomic]]
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[[Category: Protein structure initiative]]
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[[Category: Psi-2]]
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[[Category: Structural genomic]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 22:38:16 2008''
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Current revision

The crystal structure of the glycerophosphodiester phosphodiesterase from Shigella flexneri 2a

PDB ID 2otd

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OCA

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