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2ywf

From Proteopedia

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{{Seed}}
 
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[[Image:2ywf.png|left|200px]]
 
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==Crystal structure of GMPPNP-bound LepA from Aquifex aeolicus==
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The line below this paragraph, containing "STRUCTURE_2ywf", creates the "Structure Box" on the page.
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<StructureSection load='2ywf' size='340' side='right'caption='[[2ywf]], [[Resolution|resolution]] 2.24&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2ywf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YWF FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.24&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GNP:PHOSPHOAMINOPHOSPHONIC+ACID-GUANYLATE+ESTER'>GNP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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{{STRUCTURE_2ywf| PDB=2ywf | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ywf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ywf OCA], [https://pdbe.org/2ywf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ywf RCSB], [https://www.ebi.ac.uk/pdbsum/2ywf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ywf ProSAT], [https://www.topsan.org/Proteins/RSGI/2ywf TOPSAN]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/LEPA_AQUAE LEPA_AQUAE] Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner (By similarity).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yw/2ywf_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ywf ConSurf].
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<div style="clear:both"></div>
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===Crystal structure of GMPPNP-bound LepA from Aquifex aeolicus===
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==See Also==
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*[[Elongation factor 3D structures|Elongation factor 3D structures]]
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*[[Escherichia coli LepA%2C the ribosomal back translocase|Escherichia coli LepA%2C the ribosomal back translocase]]
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==About this Structure==
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*[[GTP-binding protein 3D structures|GTP-binding protein 3D structures]]
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2YWF is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWF OCA].
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__TOC__
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[[Category: Aquifex aeolicus]]
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</StructureSection>
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[[Category: Single protein]]
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[[Category: Aquifex aeolicus VF5]]
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[[Category: Hanawa-Suetsugu, K.]]
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[[Category: Large Structures]]
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[[Category: Kaminishi, T.]]
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[[Category: Hanawa-Suetsugu K]]
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[[Category: Kawazoe, M.]]
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[[Category: Kaminishi T]]
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[[Category: Nakayama-Ushikoshi, R.]]
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[[Category: Kawazoe M]]
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[[Category: Nishino, A.]]
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[[Category: Nakayama-Ushikoshi R]]
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[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
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[[Category: Nishino A]]
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[[Category: Shirouzu, M.]]
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[[Category: Shirouzu M]]
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[[Category: Takemoto, C.]]
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[[Category: Takemoto C]]
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[[Category: Terada, T.]]
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[[Category: Terada T]]
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[[Category: Yokoyama, S.]]
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[[Category: Yokoyama S]]
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[[Category: Beta-barrel]]
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[[Category: Ferredoxin-like domain]]
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[[Category: G domain]]
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[[Category: National project on protein structural and functional analyse]]
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[[Category: Nppsfa]]
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[[Category: Riken structural genomics/proteomics initiative]]
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[[Category: Rsgi]]
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[[Category: Structural genomic]]
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[[Category: Translation]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 01:55:38 2008''
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Current revision

Crystal structure of GMPPNP-bound LepA from Aquifex aeolicus

PDB ID 2ywf

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