This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2oer

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:17, 28 December 2023) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2oer.png|left|200px]]
 
-
<!--
+
==Probable Transcriptional Regulator from Pseudomonas aeruginosa==
-
The line below this paragraph, containing "STRUCTURE_2oer", creates the "Structure Box" on the page.
+
<StructureSection load='2oer' size='340' side='right'caption='[[2oer]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2oer]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OER OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OER FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_2oer| PDB=2oer | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oer FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oer OCA], [https://pdbe.org/2oer PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oer RCSB], [https://www.ebi.ac.uk/pdbsum/2oer PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oer ProSAT], [https://www.topsan.org/Proteins/MCSG/2oer TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Probable Transcriptional Regulator from Pseudomonas aeruginosa===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q9I3U1_PSEAE Q9I3U1_PSEAE]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2OER is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OER OCA].
+
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oe/2oer_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oer ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Pseudomonas aeruginosa]]
[[Category: Pseudomonas aeruginosa]]
-
[[Category: Single protein]]
+
[[Category: Edwards A]]
-
[[Category: Edwards, A.]]
+
[[Category: Joachimiak A]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Kagan O]]
-
[[Category: Kagan, O.]]
+
[[Category: Kim Y]]
-
[[Category: Kim, Y.]]
+
[[Category: Savchenko A]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Skarina T]]
-
[[Category: Savchenko, A.]]
+
-
[[Category: Skarina, T.]]
+
-
[[Category: Alpha-beta]]
+
-
[[Category: Helix-turn-helix]]
+
-
[[Category: Mcsg]]
+
-
[[Category: Midwest center for structural genomic]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Transcription]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 02:04:41 2008''
+

Current revision

Probable Transcriptional Regulator from Pseudomonas aeruginosa

PDB ID 2oer

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools