1sk1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1sk1" size="450" color="white" frame="true" align="right" spinBox="true" caption="1sk1, resolution 1.55&Aring;" /> '''ARSENATE REDUCTASE R...)
Current revision (07:26, 9 October 2024) (edit) (undo)
 
(18 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1sk1.gif|left|200px]]<br /><applet load="1sk1" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1sk1, resolution 1.55&Aring;" />
 
-
'''ARSENATE REDUCTASE R60K MUTANT +0.4M ARSENATE FROM E. COLI'''<br />
 
-
==Overview==
+
==ARSENATE REDUCTASE R60K MUTANT +0.4M ARSENATE FROM E. COLI==
-
Arsenic is a ubiquitous environmental toxic metal. Consequently, organisms, detoxify arsenate by reduction to arsenite, which is then excreted or, sequestered. The ArsC arsenate reductase from Escherichia coli plasmid, R773, the best characterized arsenic-modifying enzyme, has a catalytic, cysteine, Cys 12, in the active site, surrounded by an arginine triad, composed of Arg 60, Arg 94, and Arg 107. During the reaction cycle, the, native enzyme forms a unique monohydroxyl Cys 12-thiol-arsenite adduct, that contains a positive charge on the arsenic. We hypothesized previously, that this unstable intermediate allows for rapid dissociation of the, product arsenite. In this study, the role of Arg 60 in product formation, was evaluated by mutagenesis. A total of eight new structures of ArsC were, determined at resolutions between 1.3 A and 1.8 A, with R(free) values, between 0.18 and 0.25. The crystal structures of R60K and R60A ArsC, equilibrated with the product arsenite revealed a covalently bound Cys, 12-thiol-dihydroxyarsenite without a charge on the arsenic atom. We, propose that this intermediate is more stable than the monohydroxyarsenite, intermediate of the native enzyme, resulting in slow release of product, and, consequently, loss of activity.
+
<StructureSection load='1sk1' size='340' side='right'caption='[[1sk1]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1sk1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SK1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SK1 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.55&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CS:CESIUM+ION'>CS</scene>, <scene name='pdbligand=CSR:S-ARSONOCYSTEINE'>CSR</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sk1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sk1 OCA], [https://pdbe.org/1sk1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sk1 RCSB], [https://www.ebi.ac.uk/pdbsum/1sk1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sk1 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ARSC1_ECOLX ARSC1_ECOLX] Reduction of arsenate [As(V)] to arsenite [As(III)]. This protein expands the substrate specificity of ArsAB pump which can extrude arsenite and antimonite to allow for arsenate pumping and resistance.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sk/1sk1_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1sk1 ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Arsenic is a ubiquitous environmental toxic metal. Consequently, organisms detoxify arsenate by reduction to arsenite, which is then excreted or sequestered. The ArsC arsenate reductase from Escherichia coli plasmid R773, the best characterized arsenic-modifying enzyme, has a catalytic cysteine, Cys 12, in the active site, surrounded by an arginine triad composed of Arg 60, Arg 94, and Arg 107. During the reaction cycle, the native enzyme forms a unique monohydroxyl Cys 12-thiol-arsenite adduct that contains a positive charge on the arsenic. We hypothesized previously that this unstable intermediate allows for rapid dissociation of the product arsenite. In this study, the role of Arg 60 in product formation was evaluated by mutagenesis. A total of eight new structures of ArsC were determined at resolutions between 1.3 A and 1.8 A, with R(free) values between 0.18 and 0.25. The crystal structures of R60K and R60A ArsC equilibrated with the product arsenite revealed a covalently bound Cys 12-thiol-dihydroxyarsenite without a charge on the arsenic atom. We propose that this intermediate is more stable than the monohydroxyarsenite intermediate of the native enzyme, resulting in slow release of product and, consequently, loss of activity.
-
==About this Structure==
+
Arginine 60 in the ArsC arsenate reductase of E. coli plasmid R773 determines the chemical nature of the bound As(III) product.,DeMel S, Shi J, Martin P, Rosen BP, Edwards BF Protein Sci. 2004 Sep;13(9):2330-40. Epub 2004 Aug 4. PMID:15295115<ref>PMID:15295115</ref>
-
1SK1 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with SO4 and CS as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Arsenate_reductase_(glutaredoxin) Arsenate reductase (glutaredoxin)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.20.4.1 1.20.4.1] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1SK1 OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
Arginine 60 in the ArsC arsenate reductase of E. coli plasmid R773 determines the chemical nature of the bound As(III) product., DeMel S, Shi J, Martin P, Rosen BP, Edwards BF, Protein Sci. 2004 Sep;13(9):2330-40. Epub 2004 Aug 4. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15295115 15295115]
+
</div>
-
[[Category: Arsenate reductase (glutaredoxin)]]
+
<div class="pdbe-citations 1sk1" style="background-color:#fffaf0;"></div>
-
[[Category: Escherichia coli]]
+
-
[[Category: Single protein]]
+
-
[[Category: DeMel, S.]]
+
-
[[Category: Edwards, B.F.]]
+
-
[[Category: CS]]
+
-
[[Category: SO4]]
+
-
[[Category: arsc]]
+
-
[[Category: arsenate]]
+
-
[[Category: arsenite]]
+
-
[[Category: reductase]]
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 02:25:51 2007''
+
==See Also==
 +
*[[Arsenate reductase 3D structures|Arsenate reductase 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Escherichia coli]]
 +
[[Category: Large Structures]]
 +
[[Category: DeMel S]]
 +
[[Category: Edwards BF]]

Current revision

ARSENATE REDUCTASE R60K MUTANT +0.4M ARSENATE FROM E. COLI

PDB ID 1sk1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools