This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2r4i

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:50, 25 January 2023) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2r4i.png|left|200px]]
 
-
<!--
+
==CRYSTAL STRUCTURE OF A NTF2-LIKE PROTEIN (CHU_1428) FROM CYTOPHAGA HUTCHINSONII ATCC 33406 AT 1.60 A RESOLUTION==
-
The line below this paragraph, containing "STRUCTURE_2r4i", creates the "Structure Box" on the page.
+
<StructureSection load='2r4i' size='340' side='right'caption='[[2r4i]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2r4i]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Cytophaga_hutchinsonii_ATCC_33406 Cytophaga hutchinsonii ATCC 33406]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R4I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R4I FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r4i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r4i OCA], [https://pdbe.org/2r4i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r4i RCSB], [https://www.ebi.ac.uk/pdbsum/2r4i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r4i ProSAT], [https://www.topsan.org/Proteins/JCSG/2r4i TOPSAN]</span></td></tr>
-
{{STRUCTURE_2r4i| PDB=2r4i | SCENE= }}
+
</table>
-
 
+
== Evolutionary Conservation ==
-
===Crystal structure of NTF2-like protein of unknown function (YP_678039.1) from Cytophaga hutchinsonii ATCC 33406 at 1.60 A resolution===
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r4/2r4i_consurf.spt"</scriptWhenChecked>
-
2R4I is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Cytophaga_hutchinsonii_atcc_33406 Cytophaga hutchinsonii atcc 33406]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R4I OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Cytophaga hutchinsonii atcc 33406]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r4i ConSurf].
-
[[Category: Jcsg]]
+
<div style="clear:both"></div>
-
[[Category: Joint center for structural genomic]]
+
__TOC__
-
[[Category: Ntf2-like protein of unknown function]]
+
</StructureSection>
-
[[Category: Protein structure initiative]]
+
[[Category: Cytophaga hutchinsonii ATCC 33406]]
-
[[Category: Psi-2]]
+
[[Category: Large Structures]]
-
[[Category: Structural genomic]]
+
-
[[Category: Unknown function]]
+
-
[[Category: Yp_678039 1]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 06:40:25 2008''
+

Current revision

CRYSTAL STRUCTURE OF A NTF2-LIKE PROTEIN (CHU_1428) FROM CYTOPHAGA HUTCHINSONII ATCC 33406 AT 1.60 A RESOLUTION

PDB ID 2r4i

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools