This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1wkg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:31, 13 March 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1wkg.png|left|200px]]
 
-
<!--
+
==Acetylornithine aminotransferase from thermus thermophilus HB8==
-
The line below this paragraph, containing "STRUCTURE_1wkg", creates the "Structure Box" on the page.
+
<StructureSection load='1wkg' size='340' side='right'caption='[[1wkg]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1wkg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WKG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WKG FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=POI:N~2~-ACETYL-N~5~-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-ORNITHINE'>POI</scene></td></tr>
-
{{STRUCTURE_1wkg| PDB=1wkg | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wkg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wkg OCA], [https://pdbe.org/1wkg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wkg RCSB], [https://www.ebi.ac.uk/pdbsum/1wkg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wkg ProSAT], [https://www.topsan.org/Proteins/RSGI/1wkg TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Acetylornithine aminotransferase from thermus thermophilus HB8===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/LYSJ_THET8 LYSJ_THET8] Catalyzes the transfer of the amino group of L-glutamate to [LysW]-aminoadipate 6-semialdehyde, generating [LysW]-gamma-L-lysine.[HAMAP-Rule:MF_02084]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
1WKG is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WKG OCA].
+
Check<jmol>
-
[[Category: Acetylornithine transaminase]]
+
<jmolCheckbox>
-
[[Category: Single protein]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wk/1wkg_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wkg ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Thermus thermophilus]]
[[Category: Thermus thermophilus]]
-
[[Category: Goto, M.]]
+
[[Category: Goto M]]
-
[[Category: Hirotsu, K.]]
+
[[Category: Hirotsu K]]
-
[[Category: Matsumura, M.]]
+
[[Category: Matsumura M]]
-
[[Category: Miyahara, I.]]
+
[[Category: Miyahara I]]
-
[[Category: Omi, R.]]
+
[[Category: Omi R]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
-
[[Category: Aminotransferase]]
+
-
[[Category: Plp]]
+
-
[[Category: Riken structural genomics/proteomics initiative]]
+
-
[[Category: Rsgi]]
+
-
[[Category: Structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 06:41:08 2008''
+

Current revision

Acetylornithine aminotransferase from thermus thermophilus HB8

PDB ID 1wkg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools