This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3bhp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:42, 12 January 2022) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3bhp.png|left|200px]]
 
-
<!--
+
==Crystal structure of UPF0291 protein ynzC from Bacillus subtilis at resolution 2.0 A. Northeast Structural Genomics Consortium target SR384==
-
The line below this paragraph, containing "STRUCTURE_3bhp", creates the "Structure Box" on the page.
+
<StructureSection load='3bhp' size='340' side='right'caption='[[3bhp]], [[Resolution|resolution]] 2.01&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3bhp]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BHP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BHP FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
-->
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2hep|2hep]], [[2jvd|2jvd]]</div></td></tr>
-
{{STRUCTURE_3bhp| PDB=3bhp | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ynzC, BSU17880 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bhp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bhp OCA], [https://pdbe.org/3bhp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bhp RCSB], [https://www.ebi.ac.uk/pdbsum/3bhp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bhp ProSAT], [https://www.topsan.org/Proteins/NESGC/3bhp TOPSAN]</span></td></tr>
-
===Crystal structure of UPF0291 protein ynzC from Bacillus subtilis at resolution 2.0 A. Northeast Structural Genomics Consortium target SR384===
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3BHP is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BHP OCA].
+
<jmolCheckbox>
-
[[Category: Bacillus subtilis]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bh/3bhp_consurf.spt"</scriptWhenChecked>
-
[[Category: Single protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Acton, T B.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Baran, M C.]]
+
</jmolCheckbox>
-
[[Category: Cunningham, K.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bhp ConSurf].
-
[[Category: Hunt, J F.]]
+
<div style="clear:both"></div>
-
[[Category: Janjua, H.]]
+
__TOC__
-
[[Category: Kuzin, A P.]]
+
</StructureSection>
-
[[Category: Maglaqui, M.]]
+
[[Category: Vibrio subtilis ehrenberg 1835]]
-
[[Category: Montelione, G T.]]
+
[[Category: Large Structures]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Acton, T B]]
-
[[Category: Owens, L A.]]
+
[[Category: Baran, M C]]
-
[[Category: Rost, B.]]
+
[[Category: Cunningham, K]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Hunt, J F]]
-
[[Category: Su, M.]]
+
[[Category: Janjua, H]]
-
[[Category: Tong, L.]]
+
[[Category: Kuzin, A P]]
-
[[Category: Xiao, R.]]
+
[[Category: Maglaqui, M]]
-
[[Category: Zhao, L.]]
+
[[Category: Montelione, G T]]
 +
[[Category: Structural genomic]]
 +
[[Category: Owens, L A]]
 +
[[Category: Rost, B]]
 +
[[Category: Seetharaman, J]]
 +
[[Category: Su, M]]
 +
[[Category: Tong, L]]
 +
[[Category: Xiao, R]]
 +
[[Category: Zhao, L]]
[[Category: Cytoplasm]]
[[Category: Cytoplasm]]
[[Category: Nesg]]
[[Category: Nesg]]
-
[[Category: Northeast structural genomics consortium]]
 
[[Category: O31818]]
[[Category: O31818]]
-
[[Category: Protein structure initiative]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Psi-2]]
+
[[Category: Sr384]]
[[Category: Sr384]]
-
[[Category: Structural genomic]]
 
[[Category: Unknown function]]
[[Category: Unknown function]]
[[Category: Upf0291 protein ynzc]]
[[Category: Upf0291 protein ynzc]]
-
[[Category: X-ray structure]]
 
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 07:00:53 2008''
 

Current revision

Crystal structure of UPF0291 protein ynzC from Bacillus subtilis at resolution 2.0 A. Northeast Structural Genomics Consortium target SR384

PDB ID 3bhp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools