This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ph1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:24, 17 June 2021) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2ph1.png|left|200px]]
 
-
<!--
+
==Crystal structure of nucleotide-binding protein AF2382 from Archaeoglobus fulgidus, Northeast Structural Genomics Target GR165==
-
The line below this paragraph, containing "STRUCTURE_2ph1", creates the "Structure Box" on the page.
+
<StructureSection load='2ph1' size='340' side='right'caption='[[2ph1]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2ph1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arcfu Arcfu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PH1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PH1 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_2ph1| PDB=2ph1 | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AF_2382 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224325 ARCFU])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ph1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ph1 OCA], [https://pdbe.org/2ph1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ph1 RCSB], [https://www.ebi.ac.uk/pdbsum/2ph1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ph1 ProSAT], [https://www.topsan.org/Proteins/NESGC/2ph1 TOPSAN]</span></td></tr>
-
===Crystal structure of nucleotide-binding protein AF2382 from Archaeoglobus fulgidus, Northeast Structural Genomics Target GR165===
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
2PH1 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PH1 OCA].
+
<jmolCheckbox>
-
[[Category: Archaeoglobus fulgidus]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ph/2ph1_consurf.spt"</scriptWhenChecked>
-
[[Category: Single protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Abashidze, M.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Acton, T B.]]
+
</jmolCheckbox>
-
[[Category: Baran, M C.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ph1 ConSurf].
-
[[Category: Fang, Y.]]
+
<div style="clear:both"></div>
-
[[Category: Forouhar, F.]]
+
__TOC__
-
[[Category: Hunt, J F.]]
+
</StructureSection>
-
[[Category: Janjua, H.]]
+
[[Category: Arcfu]]
-
[[Category: Liu, J.]]
+
[[Category: Large Structures]]
-
[[Category: Montelione, G T.]]
+
[[Category: Abashidze, M]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Acton, T B]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Baran, M C]]
-
[[Category: Tong, L.]]
+
[[Category: Fang, Y]]
-
[[Category: Xiao, R.]]
+
[[Category: Forouhar, F]]
 +
[[Category: Hunt, J F]]
 +
[[Category: Janjua, H]]
 +
[[Category: Liu, J]]
 +
[[Category: Montelione, G T]]
 +
[[Category: Structural genomic]]
 +
[[Category: Seetharaman, J]]
 +
[[Category: Tong, L]]
 +
[[Category: Xiao, R]]
[[Category: Alpha-beta protein]]
[[Category: Alpha-beta protein]]
 +
[[Category: Ligand binding protein]]
[[Category: Nesg]]
[[Category: Nesg]]
-
[[Category: Northeast structural genomics consortium]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 07:42:46 2008''
+

Current revision

Crystal structure of nucleotide-binding protein AF2382 from Archaeoglobus fulgidus, Northeast Structural Genomics Target GR165

PDB ID 2ph1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools