2zbo

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (01:33, 21 November 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2zbo.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of low-redox-potential cytochrom c6 from brown alga Hizikia fusiformis at 1.6 A resolution==
-
The line below this paragraph, containing "STRUCTURE_2zbo", creates the "Structure Box" on the page.
+
<StructureSection load='2zbo' size='340' side='right'caption='[[2zbo]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2zbo]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Sargassum_fusiforme Sargassum fusiforme]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZBO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZBO FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_2zbo| PDB=2zbo | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zbo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zbo OCA], [https://pdbe.org/2zbo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zbo RCSB], [https://www.ebi.ac.uk/pdbsum/2zbo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zbo ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q76FN8_SARFS Q76FN8_SARFS] Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.[ARBA:ARBA00002347]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zb/2zbo_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zbo ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The primary sequence of cytochrome c(6) from the brown alga Hizikia fusiformis has been determined by cDNA cloning and the crystal structure has been solved at 1.6 A resolution. The crystal belonged to the tetragonal space group P4(1)2(1)2, with unit-cell parameters a = b = 84.58, c = 232.91 A and six molecules per asymmetric unit. The genome code, amino-acid sequence and crystal structure of H. fusiformis cytochrome c(6) were most similar to those of red algal cytochrome c(6). These results support the hypothesis that brown algae acquired their chloroplasts via secondary endosymbiosis involving a red algal endosymbiont and a eukaryote host.
-
===Crystal structure of low-redox-potential cytochrom c6 from brown alga Hizikia fusiformis at 1.6 A resolution===
+
Cloning, expression and purification of cytochrome c(6) from the brown alga Hizikia fusiformis and complete X-ray diffraction analysis of the structure.,Akazaki H, Kawai F, Chida H, Matsumoto Y, Hirayama M, Hoshikawa K, Unzai S, Hakamata W, Nishio T, Park SY, Oku T Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Aug 1;64(Pt, 8):674-80. Epub 2008 Jul 5. PMID:18678931<ref>PMID:18678931</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_18678931}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 2zbo" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 18678931 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_18678931}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
2ZBO is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Hizikia_fusiformis Hizikia fusiformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZBO OCA].
+
[[Category: Sargassum fusiforme]]
-
 
+
[[Category: Akazaki H]]
-
==Reference==
+
[[Category: Chida H]]
-
Cloning, expression and purification of cytochrome c(6) from the brown alga Hizikia fusiformis and complete X-ray diffraction analysis of the structure., Akazaki H, Kawai F, Chida H, Matsumoto Y, Hirayama M, Hoshikawa K, Unzai S, Hakamata W, Nishio T, Park SY, Oku T, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Aug 1;64(Pt, 8):674-80. Epub 2008 Jul 5. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18678931 18678931]
+
[[Category: Hakamata W]]
-
[[Category: Hizikia fusiformis]]
+
[[Category: Hirayama M]]
-
[[Category: Single protein]]
+
[[Category: Hosikawa K]]
-
[[Category: Akazaki, H.]]
+
[[Category: Kawai F]]
-
[[Category: Chida, H.]]
+
[[Category: Matsumoto Y]]
-
[[Category: Hakamata, W.]]
+
[[Category: Nakade H]]
-
[[Category: Hirayama, M.]]
+
[[Category: Nishio T]]
-
[[Category: Hosikawa, K.]]
+
[[Category: Oku T]]
-
[[Category: Kawai, F.]]
+
[[Category: Park S-Y]]
-
[[Category: Matsumoto, Y.]]
+
[[Category: Satoh T]]
-
[[Category: Nakade, H.]]
+
[[Category: Sirasaki I]]
-
[[Category: Nishio, T.]]
+
[[Category: Suruga K]]
-
[[Category: Oku, T.]]
+
[[Category: Unzai S]]
-
[[Category: Park, S Y.]]
+
[[Category: Yamada S]]
-
[[Category: Satoh, T.]]
+
-
[[Category: Sirasaki, I.]]
+
-
[[Category: Suruga, K.]]
+
-
[[Category: Unzai, S.]]
+
-
[[Category: Yamada, S.]]
+
-
[[Category: Brown alga]]
+
-
[[Category: Cytochrome c6]]
+
-
[[Category: Electron transport]]
+
-
[[Category: Heme]]
+
-
[[Category: Iron]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Redox potential]]
+
-
[[Category: Transit peptide]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 1 21:38:30 2008''
+

Current revision

Crystal structure of low-redox-potential cytochrom c6 from brown alga Hizikia fusiformis at 1.6 A resolution

PDB ID 2zbo

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2zbo"
Personal tools