1sxy

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(New page: 200px<br /><applet load="1sxy" size="450" color="white" frame="true" align="right" spinBox="true" caption="1sxy, resolution 1.07&Aring;" /> '''1.07 A Crystal Struc...)
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[[Image:1sxy.gif|left|200px]]<br /><applet load="1sxy" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1sxy, resolution 1.07&Aring;" />
 
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'''1.07 A Crystal Structure of D30N Mutant of Nitrophorin 4 from Rhodnius Prolixus'''<br />
 
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==Overview==
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==1.07 A Crystal Structure of D30N Mutant of Nitrophorin 4 from Rhodnius Prolixus==
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Nitrophorins are ferric heme proteins that transport nitric oxide (NO), from blood-sucking insects to victims. NO binding is tighter at lower pH, values, as found in the insect salivary gland, and weaker at the pH of the, victim's tissue, facilitating NO release and subsequent vasodilation., Previous structural analyses of nitrophorin 4 (NP4) from Rhodnius prolixus, revealed a substantial NO-induced conformational change involving the A-B, and G-H loops, which rearrange to desolvate the distal pocket and pack, nonpolar residues against the heme-ligated NO. Previous kinetic analyses, revealed a slow, biphasic, and pH-dependent NO release, which was proposed, to be associated with loop movements. In this study, we created NP4, mutants D30A and D30N (A-B loop), D129A/L130A (G-H loop), and T121V, (distal pocket). Eight crystal structures were determined, including, complexes with NO, NH(3), and imidazole, to resolutions as high as 1.0 A., The NO-induced conformational change is largely abolished in the loop, mutants, but retained in T121V. Kinetic analyses using stopped-flow, spectroscopy revealed the pH dependence for NO release is eliminated for, D129A/L130A, considerably reduced for D30A and D30N, but retained for, T121V. NO association rates were increased 2-5-fold for T121V, but were, unchanged in the loop mutants. Taken together, our findings demonstrate, that the pH dependency for NO release is linked to loop dynamics and that, solvent reorganization is apparently rate-limiting for formation of the, initial iron-nitrosyl bond. Interestingly, the multiphasic kinetic, behavior of rNPs was not affected by mutations, and its cause remains, unclear.
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<StructureSection load='1sxy' size='340' side='right'caption='[[1sxy]], [[Resolution|resolution]] 1.07&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1sxy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodnius_prolixus Rhodnius prolixus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SXY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SXY FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.07&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sxy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sxy OCA], [https://pdbe.org/1sxy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sxy RCSB], [https://www.ebi.ac.uk/pdbsum/1sxy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sxy ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/NP4_RHOPR NP4_RHOPR] Heme-based protein that deliver nitric oxide gas (NO) to the victim while feeding, resulting in vasodilation and inhibition of platelet aggregation. Also bind tightly to histamine, which is released by the host to induce wound healing (By similarity).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sx/1sxy_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1sxy ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Nitrophorins are ferric heme proteins that transport nitric oxide (NO) from blood-sucking insects to victims. NO binding is tighter at lower pH values, as found in the insect salivary gland, and weaker at the pH of the victim's tissue, facilitating NO release and subsequent vasodilation. Previous structural analyses of nitrophorin 4 (NP4) from Rhodnius prolixus revealed a substantial NO-induced conformational change involving the A-B and G-H loops, which rearrange to desolvate the distal pocket and pack nonpolar residues against the heme-ligated NO. Previous kinetic analyses revealed a slow, biphasic, and pH-dependent NO release, which was proposed to be associated with loop movements. In this study, we created NP4 mutants D30A and D30N (A-B loop), D129A/L130A (G-H loop), and T121V (distal pocket). Eight crystal structures were determined, including complexes with NO, NH(3), and imidazole, to resolutions as high as 1.0 A. The NO-induced conformational change is largely abolished in the loop mutants, but retained in T121V. Kinetic analyses using stopped-flow spectroscopy revealed the pH dependence for NO release is eliminated for D129A/L130A, considerably reduced for D30A and D30N, but retained for T121V. NO association rates were increased 2-5-fold for T121V, but were unchanged in the loop mutants. Taken together, our findings demonstrate that the pH dependency for NO release is linked to loop dynamics and that solvent reorganization is apparently rate-limiting for formation of the initial iron-nitrosyl bond. Interestingly, the multiphasic kinetic behavior of rNPs was not affected by mutations, and its cause remains unclear.
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==About this Structure==
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Role of binding site loops in controlling nitric oxide release: structure and kinetics of mutant forms of nitrophorin 4.,Maes EM, Weichsel A, Andersen JF, Shepley D, Montfort WR Biochemistry. 2004 Jun 1;43(21):6679-90. PMID:15157102<ref>PMID:15157102</ref>
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1SXY is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Rhodnius_prolixus Rhodnius prolixus] with NH4 and HEM as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1SXY OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Role of binding site loops in controlling nitric oxide release: structure and kinetics of mutant forms of nitrophorin 4., Maes EM, Weichsel A, Andersen JF, Shepley D, Montfort WR, Biochemistry. 2004 Jun 1;43(21):6679-90. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15157102 15157102]
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</div>
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[[Category: Rhodnius prolixus]]
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<div class="pdbe-citations 1sxy" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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[[Category: Andersen, J.F.]]
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[[Category: Maes, E.M.]]
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[[Category: Montfort, W.R.]]
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[[Category: Shepley, D.]]
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[[Category: Weichsel, A.]]
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[[Category: HEM]]
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[[Category: NH4]]
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[[Category: beta barrel]]
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[[Category: ferric heme]]
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[[Category: lipocalin]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 02:49:59 2007''
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==See Also==
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*[[Nitrophorin|Nitrophorin]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Rhodnius prolixus]]
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[[Category: Andersen JF]]
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[[Category: Maes EM]]
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[[Category: Montfort WR]]
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[[Category: Shepley D]]
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[[Category: Weichsel A]]

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1.07 A Crystal Structure of D30N Mutant of Nitrophorin 4 from Rhodnius Prolixus

PDB ID 1sxy

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