1t4b

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1t4b" size="450" color="white" frame="true" align="right" spinBox="true" caption="1t4b, resolution 1.60&Aring;" /> '''1.6 Angstrom structu...)
Current revision (06:25, 23 August 2023) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1t4b.jpg|left|200px]]<br /><applet load="1t4b" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1t4b, resolution 1.60&Aring;" />
 
-
'''1.6 Angstrom structure of Esherichia coli aspartate-semialdehyde dehydrogenase.'''<br />
 
-
==Overview==
+
==1.6 Angstrom structure of Esherichia coli aspartate-semialdehyde dehydrogenase.==
-
Two high-resolution structures have been determined for Eschericia coli, aspartate beta-semialdehyde dehydrogenase (ecASADH), an enzyme of the, aspartate biosynthetic pathway, which is a potential target for novel, antimicrobial drugs. Both ASADH structures were of the open form and were, refined to 1.95 A and 1.6 A resolution, allowing a more detailed, comparison with the closed form of the enzyme than previously possible. A, more complex scheme for domain closure is apparent with the subunit being, split into two further sub-domains with relative motions about three hinge, axes. Analysis of hinge data and torsion-angle difference plots is, combined to allow the proposal of a detailed structural mechanism for, ecASADH domain closure. Additionally, asymmetric distortions of individual, subunits are identified, which form the basis for the previously reported, "half-of-the-sites reactivity" (HOSR). A putative explanation of this, arrangement is also presented, suggesting the HOSR system may provide a, means for ecASADH to offset the energy required to remobilise flexible, loops at the end of the reaction cycle, and hence avoid falling into an, energy minimum.
+
<StructureSection load='1t4b' size='340' side='right'caption='[[1t4b]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1t4b]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T4B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T4B FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t4b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t4b OCA], [https://pdbe.org/1t4b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1t4b RCSB], [https://www.ebi.ac.uk/pdbsum/1t4b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t4b ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DHAS_ECOLI DHAS_ECOLI] Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate.<ref>PMID:6102909</ref> <ref>PMID:11368768</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t4/1t4b_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1t4b ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Two high-resolution structures have been determined for Eschericia coli aspartate beta-semialdehyde dehydrogenase (ecASADH), an enzyme of the aspartate biosynthetic pathway, which is a potential target for novel antimicrobial drugs. Both ASADH structures were of the open form and were refined to 1.95 A and 1.6 A resolution, allowing a more detailed comparison with the closed form of the enzyme than previously possible. A more complex scheme for domain closure is apparent with the subunit being split into two further sub-domains with relative motions about three hinge axes. Analysis of hinge data and torsion-angle difference plots is combined to allow the proposal of a detailed structural mechanism for ecASADH domain closure. Additionally, asymmetric distortions of individual subunits are identified, which form the basis for the previously reported "half-of-the-sites reactivity" (HOSR). A putative explanation of this arrangement is also presented, suggesting the HOSR system may provide a means for ecASADH to offset the energy required to remobilise flexible loops at the end of the reaction cycle, and hence avoid falling into an energy minimum.
-
==About this Structure==
+
High-resolution structures reveal details of domain closure and "half-of-sites-reactivity" in Escherichia coli aspartate beta-semialdehyde dehydrogenase.,Nichols CE, Dhaliwal B, Lockyer M, Hawkins AR, Stammers DK J Mol Biol. 2004 Aug 13;341(3):797-806. PMID:15288787<ref>PMID:15288787</ref>
-
1T4B is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with NA as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Aspartate-semialdehyde_dehydrogenase Aspartate-semialdehyde dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.11 1.2.1.11] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1T4B OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
High-resolution structures reveal details of domain closure and "half-of-sites-reactivity" in Escherichia coli aspartate beta-semialdehyde dehydrogenase., Nichols CE, Dhaliwal B, Lockyer M, Hawkins AR, Stammers DK, J Mol Biol. 2004 Aug 13;341(3):797-806. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15288787 15288787]
+
</div>
-
[[Category: Aspartate-semialdehyde dehydrogenase]]
+
<div class="pdbe-citations 1t4b" style="background-color:#fffaf0;"></div>
-
[[Category: Escherichia coli]]
+
-
[[Category: Single protein]]
+
-
[[Category: Dhaliwal, B.]]
+
-
[[Category: Hawkins, A.R.]]
+
-
[[Category: Lockyer, M.]]
+
-
[[Category: Nichols, C.E.]]
+
-
[[Category: Stammers, D.K.]]
+
-
[[Category: NA]]
+
-
[[Category: asadh]]
+
-
[[Category: aspartate semialdehyde dehydrogenase]]
+
-
[[Category: domain movement]]
+
-
[[Category: hosr]]
+
-
[[Category: lysine biosynthesis]]
+
-
[[Category: nadp+ oxidoreductase (phosphorylating)]]
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 02:58:46 2007''
+
==See Also==
 +
*[[Aspartate-semialdehyde dehydrogenase 3D structures|Aspartate-semialdehyde dehydrogenase 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Escherichia coli]]
 +
[[Category: Large Structures]]
 +
[[Category: Dhaliwal B]]
 +
[[Category: Hawkins AR]]
 +
[[Category: Lockyer M]]
 +
[[Category: Nichols CE]]
 +
[[Category: Stammers DK]]

Current revision

1.6 Angstrom structure of Esherichia coli aspartate-semialdehyde dehydrogenase.

PDB ID 1t4b

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools