2rng

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{{Seed}}
 
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[[Image:2rng.jpg|left|200px]]
 
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==Solution structure of big defensin==
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The line below this paragraph, containing "STRUCTURE_2rng", creates the "Structure Box" on the page.
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<StructureSection load='2rng' size='340' side='right'caption='[[2rng]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2rng]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Tachypleus_tridentatus Tachypleus tridentatus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RNG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RNG FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 25 models</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rng FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rng OCA], [https://pdbe.org/2rng PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rng RCSB], [https://www.ebi.ac.uk/pdbsum/2rng PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rng ProSAT]</span></td></tr>
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{{STRUCTURE_2rng| PDB=2rng | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/BDEF_TACTR BDEF_TACTR] Significantly inhibits the growth of Gram-negative and Gram-positive bacteria and fungi in vitro.<ref>PMID:8586631</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Big defensin is a 79-residue peptide derived from hemocytes of the Japanese horseshoe crab. It has antimicrobial activities against Gram-positive and -negative bacteria. The amino acid sequence of big defensin can be divided into an N-terminal hydrophobic half and a C-terminal cationic half. Interestingly, the trypsin cleaves big defensin into two fragments, the N-terminal and C-terminal fragments, which are responsible for antimicrobial activity against Gram-positive and -negative bacteria, respectively. To explore the antimicrobial mechanism of big defensin, we determined the solution structure of mature big defensin and performed a titration experiment with DPC micelles. Big defensin has a novel defensin structure; the C-terminal domain adopts a beta-defensin structure, and the N-terminal domain forms a unique globular conformation. It is noteworthy that the hydrophobic N-terminal domain undergoes a conformational change in micelle solution, while the C-terminal domain remains unchanged. Here, we propose that the N-terminal domain achieves its antimicrobial activity in a novel fashion and explain that big defensin has developed a strategy different from those of other beta-defensins to suppress the growth of Gram-positive bacteria.
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===Solution structure of big defensin===
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A novel beta-defensin structure: a potential strategy of big defensin for overcoming resistance by Gram-positive bacteria.,Kouno T, Fujitani N, Mizuguchi M, Osaki T, Nishimura S, Kawabata S, Aizawa T, Demura M, Nitta K, Kawano K Biochemistry. 2008 Oct 7;47(40):10611-9. Epub 2008 Sep 12. PMID:18785751<ref>PMID:18785751</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2rng" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_18785751}}, adds the Publication Abstract to the page
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*[[Defensin 3D structures|Defensin 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 18785751 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_18785751}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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2RNG is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Tachypleus_tridentatus Tachypleus tridentatus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RNG OCA].
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==Reference==
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A novel beta-defensin structure: a potential strategy of big defensin for overcoming resistance by Gram-positive bacteria., Kouno T, Fujitani N, Mizuguchi M, Osaki T, Nishimura S, Kawabata S, Aizawa T, Demura M, Nitta K, Kawano K, Biochemistry. 2008 Oct 7;47(40):10611-9. Epub 2008 Sep 12. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18785751 18785751]
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[[Category: Single protein]]
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[[Category: Tachypleus tridentatus]]
[[Category: Tachypleus tridentatus]]
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[[Category: Aizawa, T.]]
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[[Category: Aizawa T]]
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[[Category: Demura, M.]]
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[[Category: Demura M]]
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[[Category: Fujitani, N.]]
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[[Category: Fujitani N]]
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[[Category: Kawabata, S.]]
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[[Category: Kawabata S]]
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[[Category: Kawano, K.]]
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[[Category: Kawano K]]
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[[Category: Kouno, T.]]
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[[Category: Kouno T]]
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[[Category: Mizuguchi, M.]]
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[[Category: Mizuguchi M]]
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[[Category: Nishimura, S.]]
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[[Category: Nishimura S]]
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[[Category: Nitta, K.]]
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[[Category: Nitta K]]
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[[Category: Osaki, T.]]
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[[Category: Osaki T]]
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[[Category: Alpha-helices & beta-sheet]]
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[[Category: Antibiotic]]
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[[Category: Antimicrobial]]
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[[Category: Antimicrobial protein]]
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[[Category: Fungicide]]
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[[Category: Secreted]]
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[[Category: Three disulfide bridge]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 15 14:11:46 2008''
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Current revision

Solution structure of big defensin

PDB ID 2rng

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