User:Wayne Decatur

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[[Image:Me cropped smaller at Eileen Jewel performance 11-9-08..jpg|right|300px|Wayne Decatur in front row of Eilen Jewel private performance November 9th, 2008 at Williamsburg, MA Grange Hall]]<br />
==Wayne Decatur==
==Wayne Decatur==
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Research Associate in the Department of Biochemistry and Molecular Biology at the University of Massachusetts at Amherst.
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<!--
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Protopedia recognizes <br> and <p></p> but most times <p></p> not necessary.
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Research Associate in the Department of Biochemistry and Molecular Biology at the SUNY Upstate Medical University.<br>
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'''Member of the [[Proteopedia:About#The Proteopedia Team|Proteopedia Editorial Board]]'''.
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<p>
<p>
Interests:<br>
Interests:<br>
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small RNAs and their associated ribonucleprotein complexes; the Ribosome; catalytic RNAs; homing endonucleases
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small RNAs and their associated ribonucleoprotein complexes; the Ribosome; RNA modification; catalytic RNAs; homing endonucleases, group I introns; leucine-rich repeats; hormones and their receptors.
</p>
</p>
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<p>
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[http://people.umass.edu/wdecatur/index.html Wayne's site on the web]
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<!--[http://people.umass.edu/wdecatur/index.html Wayne's site on the web] NO LONGER WORKS-->
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</p>
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<!--[http://www.unh.edu/biochemistry/sower/post-doc-wayne-decatur.html Wayne's page on the Sower Lab site]-->
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<p>
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[http://fomightez.github.io/ Wayne at Github]
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[http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Search&db=PubMed&term=%22decatur-wa%22%5bau%5d Wayne's publications listed at the the U.S. National Library of Medicine's PubMed database]
[http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Search&db=PubMed&term=%22decatur-wa%22%5bau%5d Wayne's publications listed at the the U.S. National Library of Medicine's PubMed database]
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</p>
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email: <email>wdecatur@yahoo.com</email>
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email: {{Template:Decatur_email}}
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==Some Proteopedia Pages to Which I've Contributed==
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===Molecules: Topic Pages===
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*[[Ribosome|The Ribosome]]
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*[[Large Ribosomal Subunit of Haloarcula|Large Ribosomal Subunit of Haloarcula marismortui]]
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*[[User:Wayne Decatur/Interactions between Antibiotics and the Ribosome|Interactions between Antibiotics and the Ribosome]]
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*[[User:Wayne_Decatur/Haloarcula Large Ribosomal Subunit With Azithromycin|Azithromycin bound to the Large Ribosomal Subunit of Haloarcula marismortui]]
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*[[Suppression of RNA Silencing by Viruses]]
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*[[Plant Viral Protein p19 Suppression of RNA Silencing]]
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*[[Tomato aspermy virus protein 2b Suppression of RNA Silencing]]
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*[[Flock house virus B2 protein Suppression of RNA Silencing]]
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*[[Green Fluorescent Protein]]
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*[[Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa|DEAD-box helicase protein Vasa]]
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<!--*[[3dmq|Swi2/Snf2 protein RapA]] I FEAR EVEN HISTORY WIPED OUT WHEN REPLACED PDB ID CONTENT WITH OCA?!?!! --->
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<!--*[[2eyq|Mfd (TRCF, transcription-repair coupling factor)]] I FEAR EVEN HISTORY WIPED OUT WHEN REPLACED PDB ID CONTENT WITH OCA?!?!! --->
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<!--*[[3fpn|UvrA-UvrB interaction domains complex]] I FEAR EVEN HISTORY WIPED OUT WHEN REPLACED PDB ID CONTENT WITH OCA?!?!! --->
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<!--*[[3ews|DExD/H-box RNA-dependent ATPase DDX19 in the open]] and [[3g0h|closed]] cleft conformation I FEAR EVEN HISTORY WIPED OUT WHEN REPLACED PDB ID CONTENT WITH OCA?!?!! --->
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<!--*[[3gfp|C-terminal domain of the DExD/H-box RNA-dependent ATPase Dbp5]]| I FEAR EVEN HISTORY WIPED OUT WHEN REPLACED PDB ID CONTENT WITH OCA?!?!! --->
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*[[RecG Bound to Three-Way DNA Junction|RecG in complex with a synthetic three-way DNA junction resembling a stalled replication fork]]
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*[[LepA|Escherichia coli LepA, the ribosomal back translocase]]
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*[[Pore forming toxin, α-hemolysin|The Pore Forming Toxin, &#945;-hemolysin]]
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<!--*[[3lqq|CED-4 Apoptosome]] SEEMS EVEN HISTORY WIPED OUT WHEN REPLACED PDB ID CONTENT WITH OCA?!?!! I DID FInd the FILE FOR THE MORPH FOR THIS PAGE LISTED IN MY USER CONTRIBUTIONS-->
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*[[Glutamate receptor (GluA2)|The Glutamate Receptor (GluA2)]]
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*[[Luciferase]]
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*[[Citrate Synthase]]
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*[[Lamprey Variable Lymphocyte Receptor]]
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*[[Leucine-rich repeat|Leucine-Rich Repeat Proteins]]
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*[[Toll-like Receptors]]
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*[[Hormone]]
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*[[Human Follicle-Stimulating Hormone Complexed with its Receptor]]
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*[[G protein-coupled receptor]]
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*[[Forkhead box protein M1]]
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<!--*[[2beg|amyloid-beta fibrils]] I FEAR EVEN HISTORY WIPED OUT WHEN REPLACED PDB ID CONTENT WITH OCA?!?!! WOULD NEED TO MOVE TO BETTER NAMED PAGE --->
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*[[Kink-turn motif]]
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*[[Pseudouridine]]
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*[[Zika virus subgenomic flaviviral RNA]]
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*[[RNase P]]
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*[[yeast RNase P]]
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===Topic Pages - Structural Bioinformatics===
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*[[About Macromolecular Structure]]
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*[[Alternate locations]]
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*[[altloc]]
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*[[Cation-pi interactions]]
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*[[Complexes]]
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*[[Cystine]]
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*[[Getting Unremediated PDB Files]]
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*[[Net charge]]
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*[[Pseudoenzyme]]
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*[[Interface analysis servers]]
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*[[Isoelectric point]]
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*[[Standard Residues]] and [[Non-Standard Residues]]
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*[[Web servers for convenient generation of publication-quality figures for molecular views]]
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===Topic Pages - Education===
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* [[Teaching Strategies Using Proteopedia]]
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* [[Teaching Scenes, Tutorials, and Educators' Pages]]
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* [[Proteopedia:Practical Guide to Advanced Proteopedia Authoring and Its Use in Teaching]]
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** ''Link above is the online version of Part C of a book chapter entitled '''Publishing in Proteopedia: The Guide''' by [[User:Jaime Prilusky|Jaime Prilusky]], [[User:Wayne Decatur|Wayne Decatur]], and [[User:Eric Martz|Eric Martz]]."
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**'''Full Reference''': ''Jaime Prilusky, Wayne Decatur, Eric Martz. Publishing in Proteopedia: The Guide, Advancing Methods for Biomolecular Crystallography. ''In'' NATO Science for Peace and Security Series A: Chemistry and Biology 2013, pp 277-295 [[http://dx.doi.org/10.1007/978-94-007-6232-9_24 doi:10.1007/978-94-007-6232-9_24]]''
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* [[High school teachers' resources]]
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===Meta Pages===
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* [[Help:Editing]]
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* [[Proteopedia:How to Make a Page]]
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* [[Proteopedia:About]]
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* [[Proteopedia:Policy]]
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* [[Proteopedia:Facebook]]
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* [[Proteopedia:Twitter]]
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* [[Proteopedia:Macros]]
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* [[Proteopedia:DIY:Macros]]
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* [[Proteopedia:Cookbook]]
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* [[Combine Proteopedia scenes with inline JSmol scripting]]
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* [[Proteopedia:DIY:Templates]]
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* [[Jmol]]
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* [[DRuMS]]
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* [[Wanted pages]]
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* [[Pages needing expansion‎]]
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* [[Pages needing improvement‎]]
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==Workshops, Lectures, and Seminars==
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*[[User:Wayne Decatur/ GS647-021 Structuring against Coronavirus 2020| UPSTATE MEDICAL GS647-021 Nanocourse: Structuring against Coronavirus (April-May) 2020]]
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*[[User:Wayne Decatur/UNH BCHEM833 Structural Analysis Workshop Session Fall 2012|UNH BIOCHEM833 Structural Analysis for Non-Structural Biologists Workshop Session Fall Semester (November 8th) 2012]]
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*[[User:Wayne Decatur/UNH BCHEM833 Structural Proteomics Introductory Lecture Fall 2012|UNH BIOCHEM833 Structural Analysis for Non-Structural Biologists Introductory Lecture Fall Semester (October 25th) 2012]]
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*[[User:Wayne Decatur/NASCE2011|Workshop for the NASCE Meeting at the University of Michigan, Ann Arbor, MI July 13 2011]]
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*[[User:Wayne Decatur/UNH CME Workshop March 11 2011|Workshop for CME at the University of New Hampshire, Durham, NH March 11 2011]]
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*[[User:Wayne Decatur/UNH Seminar Feb 1st 2011|Seminar at the University of New Hampshire, Durham, NH Feb 1st 2011]]
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*[[User:Wayne Decatur/Biochem642 Molecular Visualization 2010 Fall Sessions|Biochem642 Molecular Visualization 2010 Fall Sessions]]
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*[[User:Wayne Decatur/Biochem642 Molecular Visualization Sessions|Biochem642 Molecular Visualization 2009 Fall Sessions]]
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*[[User:Wayne Decatur/Chem791A Work Session|Proteopedia Work Session for Chem 791A-Biomolecular Structure]]
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==Personal Quicklinks==
==Personal Quicklinks==
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===All Protected Pages===
===All Protected Pages===
*[http://proteopedia.org/wiki/index.php?title=Special:Contributions&limit=500&contribs=user&target=Wayne+Decatur&namespace=2 Search for User:Wayne Decatur in User Namespace]
*[http://proteopedia.org/wiki/index.php?title=Special:Contributions&limit=500&contribs=user&target=Wayne+Decatur&namespace=2 Search for User:Wayne Decatur in User Namespace]
===Files Uploaded===
===Files Uploaded===
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*[http://proteopedia.org/wiki/index.php?limit=100&title=Special%3AContributions&contribs=user&target=Wayne+Decatur&namespace=6&year=&month=-1 Files Uploaded by Wayne Decatur]
*[http://proteopedia.org/wiki/index.php?limit=100&title=Special%3AContributions&contribs=user&target=Wayne+Decatur&namespace=6&year=&month=-1 Files Uploaded by Wayne Decatur]
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===Sandboxes===
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*[[Sandbox1rpu]] working out configuration&isosurfaces&dots problems
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*[[Sandbox2hvy]] test for dots in another file
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* [[Sandbox CsrA]]
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* [[Sandbox TestMultiSurface]]
===Protected Sandbox Pages===
===Protected Sandbox Pages===
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*[[Sandbox Wayne Decatur]] available (not protected)
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*[[User:Wayne Decatur/Protected Sandbox Pages|My Protected Sandbox Pages]]
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*[[User:Wayne Decatur/Sandbox]] start
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===Protected Topic Pages===
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*[[User:Wayne_Decatur/Haloarcula Large Ribosomal Subunit]]
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*[[User:Wayne_Decatur/Haloarcula Large Ribosomal Subunit With Azithromycin]]
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*[[User:Wayne Decatur/Interactions between Antibiotics and the Ribosome]]
 +
*[[User:Wayne Decatur/Suppression of RNA Silencing by Viruses]]
 +
*[[User:Wayne Decatur/Plant Viral Protein p19 Suppression of RNA Silencing]]
 +
*[[User:Wayne Decatur/Tomato aspermy virus protein 2b Suppression of RNA Silencing]]
 +
*[[User:Wayne Decatur/Flock house virus B2 protein Suppression of RNA Silencing]]
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*[[User:Wayne Decatur/kink-turn motif]]
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*[[User:Wayne Decatur/Teaching Proteopedia]]
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*[[User:Wayne Decatur/Editing Getting Unremediated PDB Files]]
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*[[User:Wayne Decatur/Moving Components or Parts of Structures]]
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*[[User:Wayne Decatur/Generate Unfolded Structures]]
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*[[User:Wayne Decatur/Alter Disulfide Bonds in a Structure ]]
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*[[User:Wayne Decatur/4ay9 pymol]]
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*[[User:Wayne Decatur/Gal 4]]
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*[[User:Wayne Decatur/Homology Modeling]]
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*[[User:Wayne Decatur/Sequence analysis tools]]
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*[[User:Wayne Decatur/Structure analysis tools]]
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*[[User:Wayne Decatur/Molecular modeling tools]]
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*[[User:Wayne Decatur/BioWikis]]
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*[[User:Wayne Decatur/Code for Molecular Structure and Visualization Work]]
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*[[User:Wayne Decatur/I-Ppo Morph Methods]]
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*[[User:Wayne Decatur/3kg2 Morph Methods]]
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*[[User:Wayne Decatur/3fpn Morph methods]]
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*[[User:Wayne Decatur/3ewsSLASH3g0h Morph methods]]
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*[[User:Wayne Decatur/humanaGal3hg2toothers morph methods]]
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*[[User:Wayne Decatur/1cts to 2cts (citrate synthase) morph methods]]
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*[[User:Wayne Decatur/1ig8 to 3b8a (hexokinase) morph methods]]
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*[[User:Wayne Decatur/Converting Exported Proteopedia Pages from Jmol to JSmol]]
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===Templates===
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*[[User:Wayne Decatur/Templates|My Templates]]
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===Help===
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*[[:Proteopedia:Problems]]
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*[http://chemapps.stolaf.edu/jmol/docs/ Jmol Command Reference Manual] for advanced scene authoring.
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*[http://wiki.jmol.org/index.php?title=Main_Page Jmol Wiki]
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===Useful Resources===
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*[http://polyview.cchmc.org/polyview3d.html Polyview-3D]
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*[http://jena3d.fli-leibniz.de/ Jena3D Viewer]
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===Wikitext help===
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*[http://en.wikipedia.org/wiki/Help:URL#URLs_in_external_links URLS in external links has the codes for using characters that aren't A-Z a-z 0-9 ._\/~%-+&#?!=()@ in links]
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<!--I needed that for my linking to my publications at PubMed in order to generate brackers for [au]-->
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*[http://howto.wikia.com/wiki/Guide_to_Wikitext_Markup_Language_(wiki_code) Guide to Wikitext Markup Language (wiki code)]
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*[http://en.wikipedia.org/wiki/How_to_edit How to edit] illustrates use of nowiki and pre tags.
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*[http://howto.wikia.com/wiki/Howto_use_wikitext_(quick_cheat_sheet) Wikitext quick cheat sheet] also has how to make link to categories, too
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*[http://meta.wikimedia.org/wiki/Help:Category Categories can be linked to with colon in front]
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*[http://meta.wikimedia.org/wiki/Help:HTML_in_wikitext HTML in wikitext]<!--apparently I should be using <span> tags and not <font> as <font> is deprecated now-->
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*[http://en.wikipedia.org/wiki/Template:Annotated_image/doc/Samples Allows cropping of images, in addition to annotating].
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*[http://en.wikipedia.org/wiki/Table_markup WikiTable Markup Guide]
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*[http://en.wikibooks.org/wiki/Editing_Wikitext/Tables Editing Wikitext/Tables]
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*[http://en.wikipedia.org/wiki/Wikipedia:Images_linking_to_articles Images: linking to articles using wikitext]

Current revision

Wayne Decatur in front row of Eilen Jewel private performance November 9th, 2008 at Williamsburg, MA Grange Hall

Contents

Wayne Decatur

Research Associate in the Department of Biochemistry and Molecular Biology at the SUNY Upstate Medical University.
Member of the Proteopedia Editorial Board.

Interests:
small RNAs and their associated ribonucleoprotein complexes; the Ribosome; RNA modification; catalytic RNAs; homing endonucleases, group I introns; leucine-rich repeats; hormones and their receptors.


Wayne at Github

Wayne's publications listed at the the U.S. National Library of Medicine's PubMed database

email: Image:Decatur email.png


Some Proteopedia Pages to Which I've Contributed

Molecules: Topic Pages

Topic Pages - Structural Bioinformatics

Topic Pages - Education

Meta Pages

Workshops, Lectures, and Seminars

Personal Quicklinks

All Protected Pages

Files Uploaded

Sandboxes

Protected Sandbox Pages

Protected Topic Pages

Templates

Help

Useful Resources

Wikitext help

Proteopedia Page Contributors and Editors (what is this?)

Wayne Decatur, Jaime Prilusky, Eran Hodis

Retrieved from "http://52.214.119.220/wiki/index.php/User:Wayne_Decatur"
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