2rgw

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{{Seed}}
 
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[[Image:2rgw.png|left|200px]]
 
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==Catalytic Subunit of M. jannaschii Aspartate Transcarbamoylase==
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The line below this paragraph, containing "STRUCTURE_2rgw", creates the "Structure Box" on the page.
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<StructureSection load='2rgw' size='340' side='right'caption='[[2rgw]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2rgw]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii_DSM_2661 Methanocaldococcus jannaschii DSM 2661]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RGW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RGW FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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{{STRUCTURE_2rgw| PDB=2rgw | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rgw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rgw OCA], [https://pdbe.org/2rgw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rgw RCSB], [https://www.ebi.ac.uk/pdbsum/2rgw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rgw ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PYRB_METJA PYRB_METJA]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rg/2rgw_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rgw ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The catalytic trimer of Methanococcus jannaschii aspartate transcarbamoylase is extremely heat stable, maintaining 75% of its activity after heat treatment for 60 min at 75 degrees C. We undertook its structural analysis in order to understand the molecular basis of its thermostability and gain insight on how its catalytic function adapts to high temperature. Several structural elements potentially contributing to thermostability were identified. These include: (i) changes in the amino acid composition such as a decrease in the thermolabile residues Gln and Asn, an increase in the charged residues Lys and Glu, an increase in Tyr and a decrease in Ala residues; (ii) a larger number of salt bridges, in particular, the improvement of ion-pair networks; (iii) shortening of the N-terminus and shortening of three loops. An interesting feature of the crystal structure is the association of two crystallographically independent catalytic subunits into a staggered complex with an intertrimer distance of 33.8 A. The active site appears similar to Escherichia coli. Upon substrate binding, smaller changes in the global orientation of domains and larger conformational changes of the active site residues are expected as compared to E. coli.
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===Catalytic Subunit of M. jannaschii Aspartate Transcarbamoylase===
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Crystal structure of the catalytic trimer of Methanococcus jannaschii aspartate transcarbamoylase.,Vitali J, Colaneri MJ, Kantrowitz E Proteins. 2008 May 15;71(3):1324-34. PMID:18058907<ref>PMID:18058907</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2rgw" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_18058907}}, adds the Publication Abstract to the page
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*[[Aspartate carbamoyltransferase 3D structures|Aspartate carbamoyltransferase 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 18058907 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_18058907}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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2RGW is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RGW OCA].
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[[Category: Methanocaldococcus jannaschii DSM 2661]]
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[[Category: Colaneri MJ]]
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==Reference==
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[[Category: Kantrowitz ER]]
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Crystal structure of the catalytic trimer of Methanococcus jannaschii aspartate transcarbamoylase., Vitali J, Colaneri MJ, Kantrowitz E, Proteins. 2008 May 15;71(3):1324-34. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18058907 18058907]
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[[Category: Vitali J]]
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[[Category: Aspartate carbamoyltransferase]]
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[[Category: Methanocaldococcus jannaschii]]
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[[Category: Single protein]]
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[[Category: Colaneri, M J.]]
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[[Category: Kantrowitz, E R.]]
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[[Category: Vitali, J.]]
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[[Category: Aspartate transcarbamoylase]]
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[[Category: Crystal structure]]
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[[Category: Methanococcus jannaschii]]
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[[Category: Pyrimidine biosynthesis]]
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[[Category: Thermostability]]
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[[Category: Transferase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 22 09:47:42 2008''
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Current revision

Catalytic Subunit of M. jannaschii Aspartate Transcarbamoylase

PDB ID 2rgw

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