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1t9d

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(New page: 200px<br /><applet load="1t9d" size="450" color="white" frame="true" align="right" spinBox="true" caption="1t9d, resolution 2.30&Aring;" /> '''Crystal Structure Of...)
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[[Image:1t9d.gif|left|200px]]<br /><applet load="1t9d" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1t9d, resolution 2.30&Aring;" />
 
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'''Crystal Structure Of Yeast Acetohydroxyacid Synthase In Complex With A Sulfonylurea Herbicide, Metsulfuron methyl'''<br />
 
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==Overview==
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==Crystal Structure Of Yeast Acetohydroxyacid Synthase In Complex With A Sulfonylurea Herbicide, Metsulfuron methyl==
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Acetohydroxyacid synthase (AHAS, EC 2.2.1.6) is the target for the, sulfonylurea herbicides, which act as potent inhibitors of the enzyme., Chlorsulfuron (marketed as Glean) and sulfometuron methyl (marketed as, Oust) are two commercially important members of this family of herbicides., Here we report crystal structures of yeast AHAS in complex with, chlorsulfuron (at a resolution of 2.19 A), sulfometuron methyl (2.34 A), and two other sulfonylureas, metsulfuron methyl (2.29 A) and tribenuron, methyl (2.58 A). The structures observed suggest why these inhibitors have, different potencies and provide clues about the differential effects of, mutations in the active site tunnel on various inhibitors. In all of the, structures, the thiamin diphosphate cofactor is fragmented, possibly as, the result of inhibitor binding. In addition to thiamin diphosphate, AHAS, requires FAD for activity. Recently, it has been reported that reduction, of FAD can occur as a minor side reaction due to reaction with the, carbanion/enamine of the hydroxyethyl-ThDP intermediate that is formed, midway through the catalytic cycle. Here we report that the isoalloxazine, ring has a bent conformation that would account for its ability to accept, electrons from the hydroxyethyl intermediate. Most sequence and mutation, data suggest that yeast AHAS is a high-quality model for the plant enzyme.
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<StructureSection load='1t9d' size='340' side='right'caption='[[1t9d]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1t9d]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T9D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T9D FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1MM:METHYL+2-[({[(4-METHOXY-6-METHYL-1,3,5-TRIAZIN-2-YL)AMINO]CARBONYL}AMINO)SULFONYL]BENZOATE'>1MM</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=P22:ETHYL+DIHYDROGEN+DIPHOSPHATE'>P22</scene>, <scene name='pdbligand=P25:PENTYL+TRIHYDROGEN+DIPHOSPHATE'>P25</scene>, <scene name='pdbligand=PYD:2,5-DIMETHYL-PYRIMIDIN-4-YLAMINE'>PYD</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t9d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t9d OCA], [https://pdbe.org/1t9d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1t9d RCSB], [https://www.ebi.ac.uk/pdbsum/1t9d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t9d ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/ILVB_YEAST ILVB_YEAST]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t9/1t9d_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1t9d ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Acetohydroxyacid synthase (AHAS, EC 2.2.1.6) is the target for the sulfonylurea herbicides, which act as potent inhibitors of the enzyme. Chlorsulfuron (marketed as Glean) and sulfometuron methyl (marketed as Oust) are two commercially important members of this family of herbicides. Here we report crystal structures of yeast AHAS in complex with chlorsulfuron (at a resolution of 2.19 A), sulfometuron methyl (2.34 A), and two other sulfonylureas, metsulfuron methyl (2.29 A) and tribenuron methyl (2.58 A). The structures observed suggest why these inhibitors have different potencies and provide clues about the differential effects of mutations in the active site tunnel on various inhibitors. In all of the structures, the thiamin diphosphate cofactor is fragmented, possibly as the result of inhibitor binding. In addition to thiamin diphosphate, AHAS requires FAD for activity. Recently, it has been reported that reduction of FAD can occur as a minor side reaction due to reaction with the carbanion/enamine of the hydroxyethyl-ThDP intermediate that is formed midway through the catalytic cycle. Here we report that the isoalloxazine ring has a bent conformation that would account for its ability to accept electrons from the hydroxyethyl intermediate. Most sequence and mutation data suggest that yeast AHAS is a high-quality model for the plant enzyme.
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==About this Structure==
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Elucidating the specificity of binding of sulfonylurea herbicides to acetohydroxyacid synthase.,McCourt JA, Pang SS, Guddat LW, Duggleby RG Biochemistry. 2005 Feb 22;44(7):2330-8. PMID:15709745<ref>PMID:15709745</ref>
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1T9D is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae] with K, MG, 1MM, P25, FAD, YF1 and P22 as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Acetolactate_synthase Acetolactate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.2.1.6 2.2.1.6] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1T9D OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Elucidating the specificity of binding of sulfonylurea herbicides to acetohydroxyacid synthase., McCourt JA, Pang SS, Guddat LW, Duggleby RG, Biochemistry. 2005 Feb 22;44(7):2330-8. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15709745 15709745]
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</div>
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[[Category: Acetolactate synthase]]
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<div class="pdbe-citations 1t9d" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
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[[Category: Single protein]]
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[[Category: Duggleby RG]]
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[[Category: Duggleby, R.G.]]
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[[Category: Guddat LW]]
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[[Category: Guddat, L.W.]]
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[[Category: McCourt JA]]
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[[Category: McCourt, J.A.]]
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[[Category: Pang SS]]
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[[Category: Pang, S.S.]]
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[[Category: 1MM]]
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[[Category: FAD]]
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[[Category: K]]
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[[Category: MG]]
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[[Category: P22]]
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[[Category: P25]]
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[[Category: YF1]]
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[[Category: acetohydroxyacid synthase]]
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[[Category: acetolactate synthase]]
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[[Category: fad]]
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[[Category: herbicide]]
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[[Category: inhibitor]]
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[[Category: metsulfuron methyl]]
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[[Category: sulfonylurea]]
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[[Category: thiamin diphosphate]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 03:05:53 2007''
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Current revision

Crystal Structure Of Yeast Acetohydroxyacid Synthase In Complex With A Sulfonylurea Herbicide, Metsulfuron methyl

PDB ID 1t9d

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