This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3eer

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:48, 16 February 2022) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3eer.jpg|left|200px]]
 
-
<!--
+
==High resolution structure of putative organic hydroperoxide resistance protein from Vibrio cholerae O1 biovar eltor str. N16961==
-
The line below this paragraph, containing "STRUCTURE_3eer", creates the "Structure Box" on the page.
+
<StructureSection load='3eer' size='340' side='right'caption='[[3eer]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3eer]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibch Vibch]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EER OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EER FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3eer| PDB=3eer | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VC_A1006 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243277 VIBCH])</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3eer FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3eer OCA], [https://pdbe.org/3eer PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3eer RCSB], [https://www.ebi.ac.uk/pdbsum/3eer PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3eer ProSAT]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ee/3eer_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3eer ConSurf].
 +
<div style="clear:both"></div>
-
===High resolution structure of putative organic hydroperoxide resistance protein from Vibrio cholerae O1 biovar eltor str. N16961===
+
==See Also==
-
 
+
*[[Organic hydroperoxide resistance protein|Organic hydroperoxide resistance protein]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
3EER is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae_o1_biovar_el_tor Vibrio cholerae o1 biovar el tor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EER OCA].
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Vibch]]
-
[[Category: Vibrio cholerae o1 biovar el tor]]
+
[[Category: Anderson, W F]]
-
[[Category: Anderson, W F.]]
+
[[Category: Structural genomic]]
-
[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+
[[Category: Joachimiak, A]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Kwon, K]]
-
[[Category: Kwon, K.]]
+
[[Category: Maltseva, N]]
-
[[Category: Maltseva, N.]]
+
[[Category: Nocek, B]]
-
[[Category: Nocek, B.]]
+
-
[[Category: Center for structural genomics of infectious disease]]
+
[[Category: Csgid]]
[[Category: Csgid]]
[[Category: Organic hydroperoxide resistance protein]]
[[Category: Organic hydroperoxide resistance protein]]
[[Category: Orhc]]
[[Category: Orhc]]
[[Category: Oxidoreductase]]
[[Category: Oxidoreductase]]
-
[[Category: Structural genomic]]
 
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 22 10:54:18 2008''
 

Current revision

High resolution structure of putative organic hydroperoxide resistance protein from Vibrio cholerae O1 biovar eltor str. N16961

PDB ID 3eer

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3eer"
Personal tools