Sandbox1rpu
From Proteopedia
m (try adding 1d66 to get SAT to show up) |
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| + | configuration&isosurfaces&dots for p19 tour problematic until did one step at a time using console | ||
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| + | <Structure load='1d66' size='350' frame='true' align='right' caption='Insert caption here' scene='Insert optional scene name here' /> | ||
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==This works:== | ==This works:== | ||
{{Structure | {{Structure | ||
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| - | ==this works now too and I made it using view above and | + | ==this works now too and I made it using view above and configuration 1 and rebuilding one line at a time in jmol console:== |
{{Structure | {{Structure | ||
|PDB= 1rpu |SIZE=400|SCENE=Sandbox1rpu/Molecular_caliper_prefected/2|CAPTION= 1rpu, resolution 2.50Å (<scene name='Sandbox1rpu/Molecular_caliper_prefected/2'>initial scene</scene>) | |PDB= 1rpu |SIZE=400|SCENE=Sandbox1rpu/Molecular_caliper_prefected/2|CAPTION= 1rpu, resolution 2.50Å (<scene name='Sandbox1rpu/Molecular_caliper_prefected/2'>initial scene</scene>) | ||
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|RESOURCES=<span class='plainlinks'><!--[http://www-unix.oit.umass.edu/~wdecatur/p19tutorial/ Explorable Tour], Eric Martz felt no one would look here-->[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rpu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rpu OCA], [http://www.ebi.ac.uk/pdbsum/1rpu PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1rpu RCSB]</span> | |RESOURCES=<span class='plainlinks'><!--[http://www-unix.oit.umass.edu/~wdecatur/p19tutorial/ Explorable Tour], Eric Martz felt no one would look here-->[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rpu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rpu OCA], [http://www.ebi.ac.uk/pdbsum/1rpu PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1rpu RCSB]</span> | ||
}} | }} | ||
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| + | WEIRD thing with configuration I saw on October 24th 2009. When I enter 'configuration 1;' or 'configuration 2;' console in Proteopedia SAT, then it added weird lines from bases and among protein that were faint but I couldn't get rid of. It wouldn't happen in the newest version of FirstGlance linked to 1rpu page but then later it even wouldn't happen in SAT when I initiated new browser windows and JAVA runs. At first I thought it was leaving off the semi-colon but then it seemed to work with the semi-colon everywhere too. So another weird thing like when you need to scroll side of browser window to get a stuck animation going. | ||
Current revision
configuration&isosurfaces&dots for p19 tour problematic until did one step at a time using console
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This works:
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| okay but I need wireframes for some other views | |||||||
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| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
this works now too and I made it using view above and configuration 1 and rebuilding one line at a time in jmol console:
| |||||||
| 1rpu, resolution 2.50Å () | |||||||
|---|---|---|---|---|---|---|---|
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
WEIRD thing with configuration I saw on October 24th 2009. When I enter 'configuration 1;' or 'configuration 2;' console in Proteopedia SAT, then it added weird lines from bases and among protein that were faint but I couldn't get rid of. It wouldn't happen in the newest version of FirstGlance linked to 1rpu page but then later it even wouldn't happen in SAT when I initiated new browser windows and JAVA runs. At first I thought it was leaving off the semi-colon but then it seemed to work with the semi-colon everywhere too. So another weird thing like when you need to scroll side of browser window to get a stuck animation going.
