2k1i

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{{Seed}}
 
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[[Image:2k1i.jpg|left|200px]]
 
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==Synthesis, Structure and Activities of an Oral Mucosal Alpha-Defensin from Rhesus Macaque==
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The line below this paragraph, containing "STRUCTURE_2k1i", creates the "Structure Box" on the page.
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<StructureSection load='2k1i' size='340' side='right'caption='[[2k1i]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2k1i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Macaca_mulatta Macaca mulatta]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K1I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K1I FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 10 models</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k1i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k1i OCA], [https://pdbe.org/2k1i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k1i RCSB], [https://www.ebi.ac.uk/pdbsum/2k1i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k1i ProSAT]</span></td></tr>
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{{STRUCTURE_2k1i| PDB=2k1i | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/B5AKV3_MACMU B5AKV3_MACMU]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The oral cavity is an environment challenged by a large variety of pathogens. Consequently, the antimicrobial peptides expressed in that environment are interesting as they evolved to defend against a broad spectrum of bacteria and fungi. Here we report the discovery of new alpha-defensins from rhesus macaque oral mucosa and determine the first alpha-defensin structure from that species. The new peptides were identified by sequencing of reverse transcriptase-PCR products obtained from oral mucosal tissues, disclosing three mucosal alpha-defensins, termed rhesus macaque oral alpha-defensins (ROADs). The peptide corresponding to fully processed ROAD-1 was synthesized, subjected to folding/oxidation conditions, and purified. ROAD-1 was active against Staphylococcus aureus, Escherichia coli, and Candida albicans in a concentration-dependent manner. We determined the structure of ROAD-1 using NMR spectroscopy and find that the synthetic peptide adopts the canonical disulfide pairing and alpha-defensin fold. The antimicrobial mechanism of defensins has been correlated with their ability to disrupt and permeabilize the cell envelope, activities that depend on the surface features of the folded peptide. Although ROAD-1 maintains the defensin fold, the oral defensin displays distinct surface features when compared with other alpha-defensin structures.
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===Synthesis, Structure and Activities of an Oral Mucosal Alpha-Defensin from Rhesus Macaque===
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Synthesis, structure, and activities of an oral mucosal alpha-defensin from rhesus macaque.,Vasudevan S, Yuan J, Osapay G, Tran P, Tai K, Liang W, Kumar V, Selsted ME, Cocco MJ J Biol Chem. 2008 Dec 19;283(51):35869-77. Epub 2008 Oct 17. PMID:18930922<ref>PMID:18930922</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2k1i" style="background-color:#fffaf0;"></div>
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==About this Structure==
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==See Also==
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2K1I is a [[Single protein]] structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K1I OCA].
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*[[Defensin 3D structures|Defensin 3D structures]]
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[[Category: Single protein]]
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== References ==
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[[Category: Cocco, M J.]]
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<references/>
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[[Category: Osapay, G.]]
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__TOC__
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[[Category: Selsted, M.]]
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</StructureSection>
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[[Category: Tai, K.]]
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[[Category: Large Structures]]
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[[Category: Tran,P]]
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[[Category: Macaca mulatta]]
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[[Category: Vasudevan, S V.]]
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[[Category: Cocco MJ]]
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[[Category: Yuan, J.]]
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[[Category: Osapay G]]
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[[Category: Anti parallel beta sheet]]
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[[Category: Selsted M]]
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[[Category: Antimicrobial peptide]]
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[[Category: Tai K]]
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[[Category: Antimicrobial protein]]
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[[Category: Tran P]]
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[[Category: Defensin]]
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[[Category: Vasudevan SV]]
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[[Category: Rhesus macaque]]
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[[Category: Yuan J]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 29 10:44:53 2008''
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Current revision

Synthesis, Structure and Activities of an Oral Mucosal Alpha-Defensin from Rhesus Macaque

PDB ID 2k1i

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