This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2juc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:42, 1 May 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2juc.png|left|200px]]
 
-
<!--
+
==URN1 FF domain yeast==
-
The line below this paragraph, containing "STRUCTURE_2juc", creates the "Structure Box" on the page.
+
<StructureSection load='2juc' size='340' side='right'caption='[[2juc]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2juc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JUC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JUC FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2juc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2juc OCA], [https://pdbe.org/2juc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2juc RCSB], [https://www.ebi.ac.uk/pdbsum/2juc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2juc ProSAT]</span></td></tr>
-
{{STRUCTURE_2juc| PDB=2juc | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/URN1_YEAST URN1_YEAST] Component of the spliceosome involved in mRNA processing.<ref>PMID:23560879</ref> <ref>PMID:21386897</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ju/2juc_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2juc ConSurf].
 +
<div style="clear:both"></div>
-
===URN1 FF domain yeast===
+
==See Also==
-
 
+
*[[Pre-mRNA splicing factors 3D structures|Pre-mRNA splicing factors 3D structures]]
-
 
+
== References ==
-
<!--
+
<references/>
-
The line below this paragraph, {{ABSTRACT_PUBMED_18536009}}, adds the Publication Abstract to the page
+
__TOC__
-
(as it appears on PubMed at http://www.pubmed.gov), where 18536009 is the PubMed ID number.
+
</StructureSection>
-
-->
+
[[Category: Large Structures]]
-
{{ABSTRACT_PUBMED_18536009}}
+
-
 
+
-
==About this Structure==
+
-
2JUC is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JUC OCA].
+
-
 
+
-
==Reference==
+
-
Solution structure of the yeast URN1 splicing factor FF domain: Comparative analysis of charge distributions in FF domain structures-FFs and SURPs, two domains with a similar fold., Bonet R, Ramirez-Espain X, Macias MJ, Proteins. 2008 Jun 5;. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18536009 18536009]
+
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
-
[[Category: Bonet, R.]]
+
[[Category: Bonet R]]
-
[[Category: Macias, M J.]]
+
[[Category: Macias MJ]]
-
[[Category: Ramirez-Espain, X.]]
+
[[Category: Ramirez-Espain X]]
-
[[Category: Ff]]
+
-
[[Category: Helical bundle]]
+
-
[[Category: Mrna processing]]
+
-
[[Category: Mrna splicing]]
+
-
[[Category: Nmr]]
+
-
[[Category: Nucleus]]
+
-
[[Category: Solution]]
+
-
[[Category: Spliceosome]]
+
-
[[Category: Unknown function]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 12 10:03:41 2008''
+

Current revision

URN1 FF domain yeast

PDB ID 2juc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2juc"
Personal tools