1yzr

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{{Seed}}
 
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[[Image:1yzr.png|left|200px]]
 
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==Manganese peroxidase-Sm(III) complex==
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The line below this paragraph, containing "STRUCTURE_1yzr", creates the "Structure Box" on the page.
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<StructureSection load='1yzr' size='340' side='right'caption='[[1yzr]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1yzr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Phanerodontia_chrysosporium Phanerodontia chrysosporium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YZR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YZR FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SM:SAMARIUM+(III)+ION'>SM</scene></td></tr>
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{{STRUCTURE_1yzr| PDB=1yzr | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yzr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yzr OCA], [https://pdbe.org/1yzr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yzr RCSB], [https://www.ebi.ac.uk/pdbsum/1yzr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yzr ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PEM1_PHACH PEM1_PHACH] Catalyzes the oxidation of Mn(2+) to Mn(3+). The latter, acting as a diffusible redox mediator, is capable of oxidizing a variety of lignin compounds.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yz/1yzr_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yzr ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Manganese peroxidase (MnP) is an extracellular heme enzyme that catalyzes the peroxide-dependent oxidation of Mn(II) to Mn(III). The Mn(III) is released from the enzyme in complex with oxalate. One heme propionate and the side chains of Glu35, Glu39, and Asp179 were identified as Mn(II) ligands in the 2.0 A resolution crystal structure. The new 1.45 A crystal structure of MnP complexed with Mn(II) provides a more accurate view of the Mn-binding site. New features include possible partial protonation of Glu39 in the Mn-binding site and glycosylation at Ser336. This is also the first report of MnP-inhibitor complex structures. At the Mn-binding site, divalent Cd(II) exhibits octahedral, hexacoordinate ligation geometry similar to that of Mn(II). Cd(II) also binds to a putative second weak metal-binding site with tetrahedral geometry at the C-terminus of the protein. Unlike that for Mn(II) and Cd(II), coordination of trivalent Sm(III) at the Mn-binding site is octacoordinate. Sm(III) was removed from a MnP-Sm(III) crystal by soaking the crystal in oxalate and then reintroduced into the binding site. Thus, direct comparisons of Sm(III)-bound and metal-free structures were made using the same crystal. No ternary complex was observed upon incubation with oxalate. The reversible binding of Sm(III) may be a useful model for the reversible binding of Mn(III) to the enzyme, which is too unstable to allow similar examination.
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===Manganese peroxidase-Sm(III) complex===
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High-resolution crystal structure of manganese peroxidase: substrate and inhibitor complexes.,Sundaramoorthy M, Youngs HL, Gold MH, Poulos TL Biochemistry. 2005 May 3;44(17):6463-70. PMID:15850380<ref>PMID:15850380</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 1yzr" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_15850380}}, adds the Publication Abstract to the page
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*[[Manganese peroxidase|Manganese peroxidase]]
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(as it appears on PubMed at http://www.pubmed.gov), where 15850380 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_15850380}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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1YZR is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Phanerochaete_chrysosporium Phanerochaete chrysosporium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YZR OCA].
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[[Category: Phanerodontia chrysosporium]]
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[[Category: Gold MH]]
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==Reference==
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[[Category: Poulos TL]]
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High-resolution crystal structure of manganese peroxidase: substrate and inhibitor complexes., Sundaramoorthy M, Youngs HL, Gold MH, Poulos TL, Biochemistry. 2005 May 3;44(17):6463-70. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15850380 15850380]
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[[Category: Sundaramoorthy M]]
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[[Category: Manganese peroxidase]]
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[[Category: Youngs HL]]
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[[Category: Phanerochaete chrysosporium]]
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[[Category: Single protein]]
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[[Category: Gold, M H.]]
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[[Category: Poulos, T L.]]
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[[Category: Sundaramoorthy, M.]]
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[[Category: Youngs, H L.]]
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[[Category: Ca-binding site]]
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[[Category: Glycosylation]]
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[[Category: Heme enzyme]]
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[[Category: Lignin degradation]]
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[[Category: Mn-binding protein]]
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[[Category: Oxidoreductase]]
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[[Category: Peroxidase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 12 20:16:18 2008''
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Current revision

Manganese peroxidase-Sm(III) complex

PDB ID 1yzr

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