2pbz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (01:18, 21 November 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2pbz.png|left|200px]]
 
-
<!--
+
==Crystal structure of an IMP biosynthesis protein PurP from Thermococcus kodakaraensis==
-
The line below this paragraph, containing "STRUCTURE_2pbz", creates the "Structure Box" on the page.
+
<StructureSection load='2pbz' size='340' side='right'caption='[[2pbz]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PBZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PBZ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_2pbz| PDB=2pbz | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pbz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pbz OCA], [https://pdbe.org/2pbz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pbz RCSB], [https://www.ebi.ac.uk/pdbsum/2pbz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pbz ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2pbz TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of an IMP biosynthesis protein PurP from Thermococcus kodakaraensis===
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
2PBZ is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermococcus_kodakarensis Thermococcus kodakarensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PBZ OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pb/2pbz_consurf.spt"</scriptWhenChecked>
-
[[Category: Thermococcus kodakarensis]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Agarwal, R.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Burley, S K.]]
+
</jmolCheckbox>
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pbz ConSurf].
-
[[Category: Swaminathan, S.]]
+
<div style="clear:both"></div>
-
[[Category: 10188d]]
+
__TOC__
-
[[Category: Atp binding protein]]
+
</StructureSection>
-
[[Category: Crystal structure]]
+
[[Category: Large Structures]]
-
[[Category: Imp biosynthesis]]
+
[[Category: Agarwal R]]
-
[[Category: New york structural genomix research consortium]]
+
[[Category: Burley SK]]
-
[[Category: Nysgxrc]]
+
[[Category: Swaminathan S]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-ii]]
+
-
[[Category: Purp]]
+
-
[[Category: Structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 09:41:10 2008''
+

Current revision

Crystal structure of an IMP biosynthesis protein PurP from Thermococcus kodakaraensis

PDB ID 2pbz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools