We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

1xw8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:56, 6 November 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1xw8.png|left|200px]]
 
-
<!--
+
==X-ray structure of putative lactam utilization protein YBGL. Northeast Structural Genomics Consortium target ET90.==
-
The line below this paragraph, containing "STRUCTURE_1xw8", creates the "Structure Box" on the page.
+
<StructureSection load='1xw8' size='340' side='right'caption='[[1xw8]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1xw8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XW8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XW8 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_1xw8| PDB=1xw8 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xw8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xw8 OCA], [https://pdbe.org/1xw8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xw8 RCSB], [https://www.ebi.ac.uk/pdbsum/1xw8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xw8 ProSAT], [https://www.topsan.org/Proteins/NESGC/1xw8 TOPSAN]</span></td></tr>
-
 
+
</table>
-
===X-ray structure of putative lactam utilization protein YBGL. Northeast Structural Genomics Consortium target ET90.===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/PXPA_ECOLI PXPA_ECOLI] Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.[HAMAP-Rule:MF_00691]<ref>PMID:28830929</ref>
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
1XW8 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XW8 OCA].
+
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xw/1xw8_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xw8 ConSurf].
 +
<div style="clear:both"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Acton, T B.]]
+
[[Category: Large Structures]]
-
[[Category: Chen, Y.]]
+
[[Category: Acton TB]]
-
[[Category: Hunt, J F.]]
+
[[Category: Chen Y]]
-
[[Category: Kuzin, A P.]]
+
[[Category: Hunt JF]]
-
[[Category: Ma, L C.]]
+
[[Category: Kuzin AP]]
-
[[Category: Montelione, G T.]]
+
[[Category: Ma L-C]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Montelione GT]]
-
[[Category: Tong, L.]]
+
[[Category: Tong L]]
-
[[Category: Vorobiev, S M.]]
+
[[Category: Vorobiev SM]]
-
[[Category: Xiao, R.]]
+
[[Category: Xiao R]]
-
[[Category: Crystal structure]]
+
-
[[Category: Nesg]]
+
-
[[Category: Northeast structural genomics consortium]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: X-ray]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 09:56:48 2008''
+

Current revision

X-ray structure of putative lactam utilization protein YBGL. Northeast Structural Genomics Consortium target ET90.

PDB ID 1xw8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1xw8"
Personal tools