This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2p17

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:11, 9 June 2021) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2p17.png|left|200px]]
 
-
<!--
+
==Crystal structure of GK1651 from Geobacillus kaustophilus==
-
The line below this paragraph, containing "STRUCTURE_2p17", creates the "Structure Box" on the page.
+
<StructureSection load='2p17' size='340' side='right'caption='[[2p17]], [[Resolution|resolution]] 1.52&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2p17]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Geoka Geoka]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P17 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P17 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_2p17| PDB=2p17 | SCENE= }}
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1j1l|1j1l]]</div></td></tr>
-
 
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GK1651 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=235909 GEOKA])</td></tr>
-
===Crystal structure of GK1651 from Geobacillus kaustophilus===
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p17 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p17 OCA], [https://pdbe.org/2p17 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p17 RCSB], [https://www.ebi.ac.uk/pdbsum/2p17 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p17 ProSAT], [https://www.topsan.org/Proteins/RSGI/2p17 TOPSAN]</span></td></tr>
-
 
+
</table>
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2P17 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Geobacillus_kaustophilus Geobacillus kaustophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P17 OCA].
+
Check<jmol>
-
[[Category: Geobacillus kaustophilus]]
+
<jmolCheckbox>
-
[[Category: Chen, L.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p1/2p17_consurf.spt"</scriptWhenChecked>
-
[[Category: Ebihara, A.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Fu, Z-Q.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: II, J T.Swindell.]]
+
</jmolCheckbox>
-
[[Category: Kuramitsu, S.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p17 ConSurf].
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
<div style="clear:both"></div>
-
[[Category: Rose, J P.]]
+
__TOC__
-
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+
</StructureSection>
-
[[Category: Shinkai, A.]]
+
[[Category: Geoka]]
-
[[Category: Wang, B C.]]
+
[[Category: Large Structures]]
-
[[Category: Yokoyama, S.]]
+
[[Category: Chen, L]]
-
[[Category: Zhu, J.]]
+
[[Category: Ebihara, A]]
 +
[[Category: Fu, Z Q]]
 +
[[Category: II, J T.Swindell]]
 +
[[Category: Kuramitsu, S]]
 +
[[Category: Structural genomic]]
 +
[[Category: Rose, J P]]
 +
[[Category: Shinkai, A]]
 +
[[Category: Wang, B C]]
 +
[[Category: Yokoyama, S]]
 +
[[Category: Zhu, J]]
[[Category: Geobacillus kaustophilus]]
[[Category: Geobacillus kaustophilus]]
[[Category: Gk1651]]
[[Category: Gk1651]]
-
[[Category: Protein structure initiative]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Psi]]
+
-
[[Category: Riken structural genomics/proteomics initiative]]
+
[[Category: Rsgi]]
[[Category: Rsgi]]
[[Category: Secsg]]
[[Category: Secsg]]
-
[[Category: Southeast collaboratory for structural genomic]]
+
[[Category: Unknown function]]
-
[[Category: Structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 10:10:38 2008''
+

Current revision

Crystal structure of GK1651 from Geobacillus kaustophilus

PDB ID 2p17

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2p17"
Personal tools