This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2dsl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:29, 25 October 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2dsl.png|left|200px]]
 
-
<!--
+
==Mutant N33D structure of phenylacetic acid degradation protein PaaI from Thermus thermophilus HB8==
-
The line below this paragraph, containing "STRUCTURE_2dsl", creates the "Structure Box" on the page.
+
<StructureSection load='2dsl' size='340' side='right'caption='[[2dsl]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2dsl]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DSL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DSL FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
{{STRUCTURE_2dsl| PDB=2dsl | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dsl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dsl OCA], [https://pdbe.org/2dsl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dsl RCSB], [https://www.ebi.ac.uk/pdbsum/2dsl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dsl ProSAT], [https://www.topsan.org/Proteins/RSGI/2dsl TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Mutant N33D structure of phenylacetic acid degradation protein PaaI from Thermus thermophilus HB8===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q5SJP3_THET8 Q5SJP3_THET8]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2DSL is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DSL OCA].
+
Check<jmol>
-
[[Category: Thermus thermophilus]]
+
<jmolCheckbox>
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ds/2dsl_consurf.spt"</scriptWhenChecked>
-
[[Category: Shimizu, K.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Hot dog fold]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: National project on protein structural and functional analyse]]
+
</jmolCheckbox>
-
[[Category: Nppsfa]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dsl ConSurf].
-
[[Category: Phenylacetic acid degradation]]
+
<div style="clear:both"></div>
-
[[Category: Riken structural genomics/proteomics initiative]]
+
__TOC__
-
[[Category: Rsgi]]
+
</StructureSection>
-
[[Category: Structural genomic]]
+
[[Category: Large Structures]]
-
[[Category: Thioesterase]]
+
[[Category: Thermus thermophilus HB8]]
-
 
+
[[Category: Shimizu K]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 10:33:34 2008''
+

Current revision

Mutant N33D structure of phenylacetic acid degradation protein PaaI from Thermus thermophilus HB8

PDB ID 2dsl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2dsl"
Personal tools