2yzj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:40, 30 October 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2yzj.png|left|200px]]
 
-
<!--
+
==Crystal structure of dCTP deaminase from Sulfolobus tokodaii==
-
The line below this paragraph, containing "STRUCTURE_2yzj", creates the "Structure Box" on the page.
+
<StructureSection load='2yzj' size='340' side='right'caption='[[2yzj]], [[Resolution|resolution]] 1.66&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2yzj]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfurisphaera_tokodaii Sulfurisphaera tokodaii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YZJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YZJ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.66&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DUD:DEOXYURIDINE-5-DIPHOSPHATE'>DUD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-
{{STRUCTURE_2yzj| PDB=2yzj | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yzj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yzj OCA], [https://pdbe.org/2yzj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yzj RCSB], [https://www.ebi.ac.uk/pdbsum/2yzj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yzj ProSAT], [https://www.topsan.org/Proteins/RSGI/2yzj TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of dCTP deaminase from Sulfolobus tokodaii===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/F9VNI5_SULTO F9VNI5_SULTO]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2YZJ is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Sulfolobus_tokodaii Sulfolobus tokodaii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YZJ OCA].
+
Check<jmol>
-
[[Category: Sulfolobus tokodaii]]
+
<jmolCheckbox>
-
[[Category: Baba, S.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yz/2yzj_consurf.spt"</scriptWhenChecked>
-
[[Category: Kanagawa, M.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Kawai, G.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Kuramitsu, S.]]
+
</jmolCheckbox>
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yzj ConSurf].
-
[[Category: Sampei, G.]]
+
<div style="clear:both"></div>
-
[[Category: Yokoyama, S.]]
+
__TOC__
-
[[Category: All beta protein]]
+
</StructureSection>
-
[[Category: Hypothetical protein]]
+
[[Category: Large Structures]]
-
[[Category: National project on protein structural and functional analyse]]
+
[[Category: Sulfurisphaera tokodaii]]
-
[[Category: Nppsfa]]
+
[[Category: Baba S]]
-
[[Category: Riken structural genomics/proteomics initiative]]
+
[[Category: Kanagawa M]]
-
[[Category: Rsgi]]
+
[[Category: Kawai G]]
-
[[Category: Structural genomic]]
+
[[Category: Kuramitsu S]]
-
[[Category: Unknown function]]
+
[[Category: Sampei G]]
-
 
+
[[Category: Yokoyama S]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 12:13:27 2008''
+

Current revision

Crystal structure of dCTP deaminase from Sulfolobus tokodaii

PDB ID 2yzj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2yzj"
Personal tools