2dma

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{{Seed}}
 
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[[Image:2dma.png|left|200px]]
 
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==Crystal Structure of PH1978 from Pyrococcus horikoshii OT3 (form II)==
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The line below this paragraph, containing "STRUCTURE_2dma", creates the "Structure Box" on the page.
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<StructureSection load='2dma' size='340' side='right'caption='[[2dma]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2dma]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DMA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DMA FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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{{STRUCTURE_2dma| PDB=2dma | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dma FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dma OCA], [https://pdbe.org/2dma PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dma RCSB], [https://www.ebi.ac.uk/pdbsum/2dma PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dma ProSAT], [https://www.topsan.org/Proteins/RSGI/2dma TOPSAN]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/VATE_PYRHO VATE_PYRHO] Produces ATP from ADP in the presence of a proton gradient across the membrane (By similarity).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/2dma_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dma ConSurf].
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<div style="clear:both"></div>
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===Crystal Structure of PH1978 from Pyrococcus horikoshii OT3 (form II)===
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==See Also==
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*[[ATPase 3D structures|ATPase 3D structures]]
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__TOC__
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</StructureSection>
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The line below this paragraph, {{ABSTRACT_PUBMED_17189637}}, adds the Publication Abstract to the page
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[[Category: Large Structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 17189637 is the PubMed ID number.
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[[Category: Pyrococcus horikoshii OT3]]
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[[Category: Kunishima N]]
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{{ABSTRACT_PUBMED_17189637}}
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[[Category: Lokanath NK]]
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==About this Structure==
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2DMA is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DMA OCA].
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==Reference==
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Dimeric core structure of modular stator subunit E of archaeal H+ -ATPase., Lokanath NK, Matsuura Y, Kuroishi C, Takahashi N, Kunishima N, J Mol Biol. 2007 Feb 23;366(3):933-44. Epub 2006 Dec 9. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17189637 17189637]
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[[Category: Pyrococcus horikoshii]]
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[[Category: Kunishima, N.]]
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[[Category: Lokanath, N K.]]
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[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
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[[Category: A-atpase]]
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[[Category: National project on protein structural and functional analyse]]
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[[Category: Nppsfa]]
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[[Category: Riken structural genomics/proteomics initiative]]
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[[Category: Rsgi]]
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[[Category: Structural genomic]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 12:53:20 2008''
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Current revision

Crystal Structure of PH1978 from Pyrococcus horikoshii OT3 (form II)

PDB ID 2dma

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