1u17
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="1u17" size="450" color="white" frame="true" align="right" spinBox="true" caption="1u17, resolution 1.70Å" /> '''1.7 A Crystal struct...) |
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| - | [[Image:1u17.gif|left|200px]]<br /><applet load="1u17" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="1u17, resolution 1.70Å" /> | ||
| - | '''1.7 A Crystal structure of H60C mutant of Nitrophorin I. Heme complexed with two molecules imidazole'''<br /> | ||
| - | == | + | ==1.7 A Crystal structure of H60C mutant of Nitrophorin I. Heme complexed with two molecules imidazole== |
| - | + | <StructureSection load='1u17' size='340' side='right'caption='[[1u17]], [[Resolution|resolution]] 1.70Å' scene=''> | |
| - | [[ | + | == Structural highlights == |
| - | [[ | + | <table><tr><td colspan='2'>[[1u17]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodnius_prolixus Rhodnius prolixus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U17 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1U17 FirstGlance]. <br> |
| - | [[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> |
| - | [ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1u17 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u17 OCA], [https://pdbe.org/1u17 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1u17 RCSB], [https://www.ebi.ac.uk/pdbsum/1u17 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1u17 ProSAT]</span></td></tr> | |
| - | [ | + | </table> |
| - | + | == Function == | |
| - | [ | + | [https://www.uniprot.org/uniprot/NP1_RHOPR NP1_RHOPR] Heme-based protein that deliver nitric oxide gas (NO) to the victim while feeding, resulting in vasodilation and inhibition of platelet aggregation. Also bind tightly to histamine, which is released by the host to induce wound healing. |
| - | [[ | + | == Evolutionary Conservation == |
| - | [ | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[ | + | Check<jmol> |
| - | [ | + | <jmolCheckbox> |
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/u1/1u17_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1u17 ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | + | ==See Also== | |
| + | *[[Nitrophorin|Nitrophorin]] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Rhodnius prolixus]] | ||
| + | [[Category: Goodin DB]] | ||
| + | [[Category: Vetter SW]] | ||
Current revision
1.7 A Crystal structure of H60C mutant of Nitrophorin I. Heme complexed with two molecules imidazole
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